RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 B4GAT1O43505 415 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 PRAMEF2O60811 474 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 OSMP13725 252 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 ITGB8P26012 769 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 GJA5P36382 358 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 SNRPD2P62316 118 aaKnown RBP10.85□□□□□ -0.67
USP53-201ENST00000274030 MORN1Q5T089 497 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 PRAMEF8Q5VWM4 474 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 PRAMEF7Q5VXH5 474 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 AWAT2Q6E213 333 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 BEST3Q8N1M1 668 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 PRR18Q8N4B5 295 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 FOXN4Q96NZ1 517 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 TMEM246Q9BRR3 403 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 ACTR10Q9NZ32 417 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 CA5BQ9Y2D0 317 aa10.85□□□□□ -0.67
USP53-201ENST00000274030 HMX3A6NHT5 357 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 DCTP40126 519 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 RSU1Q15404 277 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 OR5M10Q6IEU7 315 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 IL17RCQ8NAC3 791 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 EGLN2Q96KS0 407 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 CRB3Q9BUF7 120 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 C8orf33Q9H7E9 229 aaPredicted RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 KLHL9Q9P2J3 617 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 UBE2J1Q9Y385 318 aaPredicted RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 A0A1W2PQL4 384 aaPredicted RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 OTOL1A6NHN0 477 aaPredicted RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 ADAM12O43184 909 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 HRGP04196 525 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 AMY2AP04746 511 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 HMGN2P05204 90 aaKnown RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 ENDOUP21128 410 aaKnown RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 SLC6A11P48066 632 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 RAB11BQ15907 218 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 MICAQ29983 383 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 PARS2Q7L3T8 475 aaKnown RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 SDR9C7Q8NEX9 313 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 CRYGNQ8WXF5 182 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 C3orf30Q96M34 536 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 OR5B2Q96R09 309 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 TREX2Q9BQ50 279 aaPredicted RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 EIF5A2Q9GZV4 153 aaKnown RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 DMRT3Q9NQL9 472 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 HIF3AQ9Y2N7 669 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 XRN1Q8IZH2 1706 aaKnown RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 MYH7P12883 1935 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 DNAJC25-GNG10A0A024R161 153 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 SH3PXD2BA1X283 911 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 F5H5K5 113 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 CCR7P32248 378 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 SELENOWP63302 87 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 USF2Q15853 346 aaPredicted RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 ZNF181Q2M3W8 571 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 RNASE10Q5GAN6 216 aaKnown RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 CCNJQ5T5M9 372 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 TMEM173Q86WV6 379 aaPredicted RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 OR5T1Q8NG75 326 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 OR5AK2Q8NH90 309 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 FAM46BQ96A09 425 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 SORT1Q99523 831 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 ZNF175Q9Y473 711 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 B3GALT1Q9Y5Z6 326 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 GYPBP06028 91 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 RBMS1P29558 406 aaKnown RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 UBE2NP61088 152 aaKnown RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 TCTE1Q5JU00 501 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 UEVLDQ8IX04 471 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 METTL2AQ96IZ6 378 aaKnown RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 MAELQ96JY0 434 aaKnown RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 SGCZQ96LD1 299 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 ACPTQ9BZG2 426 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 AK6Q9Y3D8 172 aaKnown RBP10.84□□□□□ -0.67
USP53-201ENST00000274030 IER3IP1Q9Y5U9 82 aa10.84□□□□□ -0.67
USP53-201ENST00000274030 BORCS7-ASMTA0A0B4J1R7 106 aa10.83□□□□□ -0.67
USP53-201ENST00000274030 CDC14CA4D256 554 aa10.83□□□□□ -0.67
USP53-201ENST00000274030 KRBA1A5PL33 1030 aa10.83□□□□□ -0.67
USP53-201ENST00000274030 POLR1CO15160 346 aaPredicted RBP10.83□□□□□ -0.67
USP53-201ENST00000274030 JRKO75564 520 aa10.83□□□□□ -0.67
USP53-201ENST00000274030 ERV3-1Q14264 604 aa10.83□□□□□ -0.67
USP53-201ENST00000274030 EXOSC7Q15024 291 aaKnown RBP10.83□□□□□ -0.67
USP53-201ENST00000274030 ZNF440Q8IYI8 595 aa10.83□□□□□ -0.67
USP53-201ENST00000274030 ACOT4Q8N9L9 421 aa10.83□□□□□ -0.67
USP53-201ENST00000274030 ZSCAN1Q8NBB4 408 aa10.83□□□□□ -0.67
USP53-201ENST00000274030 OR52E1Q8NGJ3 308 aa10.83□□□□□ -0.67
USP53-201ENST00000274030 ZNF649Q9BS31 505 aa10.83□□□□□ -0.67
USP53-201ENST00000274030 ERVK-19Q9WJR5 959 aa10.83□□□□□ -0.67
USP53-201ENST00000274030 MBLAC1A4D2B0 266 aaPredicted RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 SLC9B1P1A6NJY1 282 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 ERCC1P07992 297 aaPredicted RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 PET100P0DJ07 73 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 C7P10643 843 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 ZNF616Q08AN1 781 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 HAGHLQ6PII5 290 aaPredicted RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 ZNF765Q7L2R6 523 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 ARHGAP12Q8IWW6 846 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 FGF13Q92913 245 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 MS4A4EQ96PG1 132 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 NXF5Q9H1B4 397 aaKnown RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 KLHL21Q9UJP4 597 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms