RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ELP5Q8TE02 316 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 SMPDL3AQ92484 453 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 SLC25A36Q96CQ1 311 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 GRAMD2BQ96HH9 432 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 NOL4LQ96MY1 436 aaPredicted RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 IL4I1Q96RQ9 567 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 MYOCQ99972 504 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 MS4A5Q9H3V2 200 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 NXF3Q9H4D5 531 aaKnown RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ACSS3Q9H6R3 686 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 RNF6Q9Y252 685 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM14AQ9Y6G1 99 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 LAMB1P07942 1786 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 A0A1B0GV50 99 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 CDC14CA4D256 554 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 GGT3PA6NGU5 568 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 UBE2Q2LH0YL09 131 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 APOA2P02652 100 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 EDN1P05305 212 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 OR5H8P0DN80 308 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 DPEP1P16444 411 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 AVPR2P30518 371 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 NR4A2P43354 598 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 POLR2JP52435 117 aaKnown RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ACTA2P62736 377 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ACTC1P68032 377 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ACTA1P68133 377 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 MRPS6P82932 125 aaKnown RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 HTRA3P83110 453 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PDZK1IP1Q13113 114 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 AMZ1Q400G9 498 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 CTSL3PQ5NE16 218 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 DOK6Q6PKX4 331 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 UNC93AQ86WB7 457 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 RALGPS2Q86X27 583 aaPredicted RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PLPP6Q8IY26 295 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 GPR137CQ8N3F9 429 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 TCEANCQ8N8B7 351 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 DTWD2Q8NBA8 298 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 CLRN3Q8NCR9 226 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 LRCH3Q96II8 777 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 URM1Q9BTM9 101 aaKnown RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ALOXE3Q9BYJ1 711 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 C1orf21Q9H246 121 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 EMC7Q9NPA0 242 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 COL20A1Q9P218 1284 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PRSS50Q9UI38 385 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 KIF25Q9UIL4 384 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 Q9Y3F1 56 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 NEURL1BA8MQ27 555 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF878C9JN71 531 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 F5H0A9 414 aaPredicted RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 GFRA2O00451 464 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ACKR2O00590 384 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ACOX3O15254 700 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 SLC16A4O15374 487 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 BCAT2O15382 392 aaPredicted RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 CDK14O94921 469 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 SLITRK5O94991 958 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PF4P02776 101 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 C8AP07357 584 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ITGA5P08648 1049 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 SRGNP10124 158 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PGCP20142 388 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PTGIRP43119 386 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PTENP60484 403 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ALKBH6Q3KRA9 238 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 NDUFAF5Q5TEU4 345 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 OPN5Q6U736 354 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 LCLAT1Q6UWP7 414 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF367Q7RTV3 350 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 HTR3CQ8WXA8 447 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 GTF2H4Q92759 462 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF566Q969W8 418 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 COQ10AQ96MF6 247 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ISCA1Q9BUE6 129 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 IFT27Q9BW83 186 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 MROQ9BYG7 248 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 CEP41Q9BYV8 373 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 TFB2MQ9H5Q4 396 aaKnown RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 EVA1AQ9H8M9 152 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF286AQ9HBT8 521 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 KCNIP2Q9NS61 270 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 OXSMQ9NWU1 459 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PDP1Q9P0J1 537 aaPredicted RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 FBXO7Q9Y3I1 522 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 FER1L4A9Z1Z3 1794 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 FRMPD3Q5JV73 1810 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ZCWPW2A0A1B0GU75 182 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 KIAA1324LA8MWY0 1029 aaPredicted RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 A1BGP04217 495 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM225BP0DP42 221 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 MARCKSL1P49006 195 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 WDR5P61964 334 aaKnown RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF616Q08AN1 781 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 DUSP8Q13202 625 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 VAMP3Q15836 100 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PROSER3Q2NL68 480 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 RAB41Q5JT25 222 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 UBAP2Q5T6F2 1119 aaKnown RBP2.65□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms