RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 GABARAPL3Q9BY60 117 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 SRMSQ9H3Y6 488 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 RIBC2Q9H4K1 309 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 KIR3DX1Q9H7L2 352 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 MVB12BQ9H7P6 319 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 SMURF2Q9HAU4 748 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 PALMDQ9NP74 551 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 FGF21Q9NSA1 209 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 SEMA5BQ9P283 1151 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 TMEFF2Q9UIK5 374 aaPredicted RBP10.4□□□□□ -0.74
SHMT2-216ENST00000554975 SNX7Q9UNH6 387 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 POFUT2Q9Y2G5 429 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 PCDHGB1Q9Y5G3 927 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 PCDHGA10Q9Y5H3 936 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 GMPPBQ9Y5P6 360 aa10.4□□□□□ -0.74
SHMT2-216ENST00000554975 ABCA2Q9BZC7 2435 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 GSAPA4D1B5 854 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 KRT87PA6NCN2 255 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 OR5K3A6NET4 321 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 TRIM64BA6NI03 449 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 NDUFS4O43181 175 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 CPNE3O75131 537 aaKnown RBP10.39□□□□□ -0.75
SHMT2-216ENST00000554975 TNFRSF21O75509 655 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 CLEC3AO75596 197 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 C6orf47O95873 294 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 POLR2CP19387 275 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-216ENST00000554975 CCNA2P20248 432 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 DDCP20711 480 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 CRATP43155 626 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 MAPK12P53778 367 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 TAS2R50P59544 299 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 DSTNP60981 165 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 SELENOWP63302 87 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 CDK6Q00534 326 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 GPR19Q15760 415 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 NEDD8Q15843 81 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 FAM198BQ6UWH4 519 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 MED25Q71SY5 747 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 GDF7Q7Z4P5 450 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 TSPYL5Q86VY4 417 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-216ENST00000554975 ARMC8Q8IUR7 673 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 RNF175Q8N4F7 328 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 TTC29Q8NA56 475 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-216ENST00000554975 GIPC3Q8TF64 312 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 NUDT8Q8WV74 236 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 ZFPM2Q8WW38 1151 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 MUL1Q969V5 352 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 MOAP1Q96BY2 351 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 THAP11Q96EK4 314 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 ZBED6CLQ96FA7 236 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-216ENST00000554975 FCRL4Q96PJ5 515 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 NODALQ96S42 347 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 MAP3K3Q99759 626 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 AMBRA1Q9C0C7 1298 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 ZNF556Q9HAH1 456 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 SOHLH2Q9NX45 425 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 EHD3Q9NZN3 535 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 PDP1Q9P0J1 537 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-216ENST00000554975 C5AR2Q9P296 337 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 EPHA6Q9UF33 1036 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 TAC3Q9UHF0 121 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 TCFL5Q9UL49 500 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 ABCG2Q9UNQ0 655 aa10.39□□□□□ -0.75
SHMT2-216ENST00000554975 TDRKHQ9Y2W6 561 aaKnown RBP10.39□□□□□ -0.75
SHMT2-216ENST00000554975 FAM32AQ9Y421 112 aaKnown RBP10.39□□□□□ -0.75
SHMT2-216ENST00000554975 NCOA6Q14686 2063 aaPredicted RBP10.38□□□□□ -0.75
SHMT2-216ENST00000554975 C5orf58C9J3I9 102 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 H3BMQ9 156 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 hCG_2039718K7EN88 272 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 SCRG1O75711 98 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 TGFB1P01137 390 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 IL3P08700 152 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 DRD2P14416 443 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 IL7RP16871 459 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 ITGA3P26006 1051 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 ELK4P28324 431 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 PPP2R1BP30154 601 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 NTSP30990 170 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 PIGAP37287 484 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 TSFMP43897 325 aaKnown RBP10.38□□□□□ -0.75
SHMT2-216ENST00000554975 RAB28P51157 221 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 IST1P53990 364 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 PER3P56645 1201 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 KRTAP10-9P60411 292 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 ISL1P61371 349 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 HBA1P69905 142 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 KCNJ10P78508 379 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 HPCAP84074 193 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 VLDLRP98155 873 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 TGM3Q08188 693 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 PMS2P3Q13401 168 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 GNA13Q14344 377 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 MLC1Q15049 377 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 ZNF385BQ569K4 471 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.38□□□□□ -0.75
SHMT2-216ENST00000554975 DEPDC1Q5TB30 811 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 GPR107Q5VW38 600 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 BHLHB9Q6PI77 547 aa10.38□□□□□ -0.75
SHMT2-216ENST00000554975 ZNF551Q7Z340 670 aaPredicted RBP10.38□□□□□ -0.75
SHMT2-216ENST00000554975 FJX1Q86VR8 437 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms