RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ALOXE3Q9BYJ1 711 aa19.29■□□□□ 0.68
VPS28-209ENST00000528142 TRIM45Q9H8W5 580 aaPredicted RBP19.29■□□□□ 0.68
VPS28-209ENST00000528142 CUTCQ9NTM9 273 aa19.29■□□□□ 0.68
VPS28-209ENST00000528142 PAK1IP1Q9NWT1 392 aaPredicted RBP19.29■□□□□ 0.68
VPS28-209ENST00000528142 PCDH15Q96QU1 1955 aa19.29■□□□□ 0.68
VPS28-209ENST00000528142 AGAP5A6NIR3 686 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 OR2B3O76000 313 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 CPNE6O95741 557 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 JUNBP17275 347 aaPredicted RBP19.28■□□□□ 0.68
VPS28-209ENST00000528142 GCGRP47871 477 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 HSD17B7P56937 341 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 PMS2P3Q13401 168 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 ZBED5Q49AG3 693 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 PIK3R3Q92569 461 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 CCDC74AQ96AQ1 378 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 RBM18Q96H35 190 aaKnown RBP19.28■□□□□ 0.68
VPS28-209ENST00000528142 POLR1BQ9H9Y6 1135 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 MGAT4BQ9UQ53 548 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 ZNF443Q9Y2A4 671 aaPredicted RBP19.28■□□□□ 0.68
VPS28-209ENST00000528142 WDFY4Q6ZS81 3184 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 OR2W5A6NFC9 320 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 TMEM150CB9EJG8 249 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 XPNPEP2O43895 674 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 COQ9O75208 318 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 WBP4O75554 376 aaKnown RBP19.28■□□□□ 0.68
VPS28-209ENST00000528142 NKX2-2O95096 273 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 RPS4Y1P22090 263 aaKnown RBP19.28■□□□□ 0.68
VPS28-209ENST00000528142 FMO3P31513 532 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 ARL4DP49703 201 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 ESRRGP62508 458 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 PROX2Q3B8N5 592 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 PGBD2Q6P3X8 592 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 PODNL1Q6PEZ8 512 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 PEX5LQ8IYB4 626 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 SPARTQ8N0X7 666 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 COX18Q8N8Q8 333 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 GPR151Q8TDV0 419 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 SAP25Q8TEE9 199 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 APH1BQ8WW43 257 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 RIT1Q92963 219 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 FBXO34Q9NWN3 711 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 REV1Q9UBZ9 1251 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 ENOPH1Q9UHY7 261 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 SLC13A4Q9UKG4 626 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 RNF6Q9Y252 685 aa19.28■□□□□ 0.68
VPS28-209ENST00000528142 CCDC88CQ9P219 2028 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 CENPVL1A0A0U1RR11 272 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 ZNF749O43361 778 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 FRS3O43559 492 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 HYAL3O43820 417 aaPredicted RBP19.27■□□□□ 0.68
VPS28-209ENST00000528142 STX11O75558 287 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 AK1P00568 194 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 FOLR1P15328 257 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 PAX7P23759 505 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 GABRA3P34903 492 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 EMDP50402 254 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 SNAP47Q5SQN1 464 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 XAF1Q6GPH4 301 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 GPR141Q7Z602 305 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 KMT5CQ86Y97 462 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 ZNF619Q8N2I2 560 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 OR1L3Q8NH93 324 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 LMF2Q9BU23 707 aaKnown RBP19.27■□□□□ 0.68
VPS28-209ENST00000528142 DUSP23Q9BVJ7 150 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 DGCR6LQ9BY27 220 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 DUSP21Q9H596 190 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 FSCN3Q9NQT6 498 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 RASSF1Q9NS23 344 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 FTSJ1Q9UET6 329 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 ZNF232Q9UNY5 417 aa19.27■□□□□ 0.68
VPS28-209ENST00000528142 VPS13AQ96RL7 3174 aa19.27■□□□□ 0.67
VPS28-209ENST00000528142 LY6G6EA0A0G2JKS1 128 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 GXYLT2A0PJZ3 443 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 OR10H3O60404 316 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 THBS1P07996 1170 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 MSL3P1P0C860 447 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 PNLIPP16233 465 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 MAOAP21397 527 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 STT3AP46977 705 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 EEF1A1P68104 462 aaKnown RBP19.26■□□□□ 0.67
VPS28-209ENST00000528142 PIGFQ07326 219 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 MAPK14Q16539 360 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 HLA-BQ31612 363 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 ZNF836Q6ZNA1 936 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 MED25Q71SY5 747 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 MORN4Q8NDC4 146 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 NR4A3Q92570 626 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 PIGKQ92643 395 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 NUDT22Q9BRQ3 303 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 PRR14Q9BWN1 585 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 UCK2Q9BZX2 261 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 KLHL28Q9NXS3 571 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 KCNE5Q9UJ90 142 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 MAU2Q9Y6X3 613 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 U3KQA8 63 aa19.26■□□□□ 0.67
VPS28-209ENST00000528142 CLDN24A6NM45 220 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 PTGES3LE9PB15 166 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 HRKO00198 91 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 KIAA0513O60268 411 aa19.25■□□□□ 0.67
VPS28-209ENST00000528142 SOX30O94993 753 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms