RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 FRG2CA6NGY1 282 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 OR6C70A6NIJ9 312 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 SYCE1LA8MT33 242 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 MSTNO14793 375 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 SMAD7O15105 426 aaKnown RBP12.88□□□□□ -0.35
CPSF1-201ENST00000526271 ERAL1O75616 437 aaKnown RBP12.88□□□□□ -0.35
CPSF1-201ENST00000526271 PDYNP01213 254 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 RPS17P08708 135 aaKnown RBP12.88□□□□□ -0.35
CPSF1-201ENST00000526271 CPOXP36551 454 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 MC3RP41968 323 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 CPA2P48052 419 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 RAE1P78406 368 aaKnown RBP12.88□□□□□ -0.35
CPSF1-201ENST00000526271 SF3B4Q15427 424 aaKnown RBP eCLIP12.88□□□□□ -0.351e-8■■■■□ 20
CPSF1-201ENST00000526271 SGO1Q5FBB7 561 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 CCNYL2Q5T2Q4 361 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 FADS6Q8N9I5 356 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 NUDT8Q8WV74 236 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 REPS1Q96D71 796 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 PHF21BQ96EK2 531 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 VSTM2LQ96N03 204 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 BTBD9Q96Q07 612 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 PIGMQ9H3S5 423 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 DLGAP4Q9Y2H0 992 aa12.88□□□□□ -0.35
CPSF1-201ENST00000526271 C1orf226A1L170 272 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 ACOX3O15254 700 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 RIPK2O43353 540 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 PHBP35232 272 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 CD79BP40259 229 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 PCYT1AP49585 367 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 MAPK12P53778 367 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 PHEXP78562 749 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 ACKR1Q16570 336 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 GGTA1PQ4G0N0 100 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 YTHDF3Q7Z739 585 aaKnown RBP12.87□□□□□ -0.35
CPSF1-201ENST00000526271 GRAMD2AQ8IUY3 354 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 OR5M1Q8NGP8 315 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 TRPC4APQ8TEL6 797 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 KAT2AQ92830 837 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 KLHL29Q96CT2 875 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 PIK3IP1Q96FE7 263 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 PERPQ96FX8 193 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 ZNF845Q96IR2 970 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-201ENST00000526271 SFXN2Q96NB2 322 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 COL21A1Q96P44 957 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 ADOQ96SZ5 270 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 UBTD1Q9HAC8 227 aa12.87□□□□□ -0.35
CPSF1-201ENST00000526271 MRPS18CQ9Y3D5 142 aaKnown RBP12.87□□□□□ -0.35
CPSF1-201ENST00000526271 CCDC151A5D8V7 595 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 STX16-NPEPL1H3BU86 382 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 STX16O14662 325 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 KLF4O43474 513 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 SMPD2O60906 423 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 CDH16O75309 829 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 PLAUP00749 431 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 ABHD2P08910 425 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 NID1P14543 1247 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 KRT15P19012 456 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 CSNK2A2P19784 350 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-201ENST00000526271 CHMP24386 653 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 GRK2P25098 689 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 STX2P32856 288 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 UGT2B10P36537 528 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 CDH13P55290 713 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 CLDN20P56880 219 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 RPP38P78345 283 aaKnown RBP12.86□□□□□ -0.35
CPSF1-201ENST00000526271 NAB1Q13506 487 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 SLC29A2Q14542 456 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 FAM83EQ2M2I3 478 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 ENPP6Q6UWR7 440 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 PRSS57Q6UWY2 283 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 MREGQ8N565 214 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 C1orf52Q8N6N3 182 aaKnown RBP12.86□□□□□ -0.35
CPSF1-201ENST00000526271 OR2M3Q8NG83 312 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 OR9A2Q8NGT5 310 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 ZNF675Q8TD23 568 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 ZNF483Q8TF39 744 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-201ENST00000526271 NPAS1Q99742 590 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 KLHDC3Q9BQ90 382 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 ACSS3Q9H6R3 686 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 XPR1Q9UBH6 696 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 SLC12A4Q9UP95 1085 aa12.86□□□□□ -0.35
CPSF1-201ENST00000526271 A0A087WUV0 522 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-201ENST00000526271 CCDC189A1A4V9 331 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 REM1O75628 298 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 SMNDC1O75940 238 aaKnown RBP eCLIP12.85□□□□□ -0.35
CPSF1-201ENST00000526271 DPP4P27487 766 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 CCNG1P51959 295 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 SIRPAP78324 504 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 PSG6Q00889 435 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 GAB1Q13480 694 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 UAP1Q16222 522 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-201ENST00000526271 ANKRD34AQ69YU3 496 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 METTL2BQ6P1Q9 378 aaKnown RBP12.85□□□□□ -0.35
CPSF1-201ENST00000526271 P3H2Q8IVL5 708 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 CCDC116Q8IYX3 515 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 ZNF610Q8N9Z0 462 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 OR7G2Q8NG99 324 aa12.85□□□□□ -0.35
CPSF1-201ENST00000526271 EFHD2Q96C19 240 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-201ENST00000526271 C11orf24Q96F05 449 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-201ENST00000526271 PGM2Q96G03 612 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms