RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 GKN2Q86XP6 184 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 LACC1Q8IV20 430 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 OR5M3Q8NGP4 307 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 LMX1AQ8TE12 382 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 SMARCD2Q92925 531 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 GAS2L1Q99501 681 aaPredicted RBP13.08□□□□□ -0.32
SYNPO-205ENST00000522122 ACTRT3Q9BYD9 372 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 CNOT2Q9NZN8 540 aaKnown RBP13.08□□□□□ -0.32
SYNPO-205ENST00000522122 TRIM64CA6NLI5 447 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 A8MU76 341 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 SMAD9O15198 467 aaKnown RBP13.08□□□□□ -0.32
SYNPO-205ENST00000522122 CHP2O43745 196 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 CTSAP10619 480 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 GTF2F2P13984 249 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 ADH7P40394 386 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 GRK1Q15835 563 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 SMN1Q16637 294 aaKnown RBP13.08□□□□□ -0.32
SYNPO-205ENST00000522122 HSD11B1LQ7Z5J1 315 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 OR6N1Q8NGY5 312 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 PXYLP1Q8TE99 480 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 CASTOR1Q8WTX7 329 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 CMKLR1Q99788 373 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 CPEB1Q9BZB8 566 aaKnown RBP13.08□□□□□ -0.32
SYNPO-205ENST00000522122 SLA2Q9H6Q3 261 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 IL20RAQ9UHF4 553 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 SERTAD3Q9UJW9 196 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 DOCK5Q9H7D0 1870 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 CPED1A4D0V7 1026 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 I6L893 689 aaPredicted RBP13.07□□□□□ -0.32
SYNPO-205ENST00000522122 AOAHP28039 575 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 VIPR2P41587 438 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 CDKN2CP42773 168 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 CST6Q15828 149 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 FOXRED2Q8IWF2 684 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 SYNPOQ8N3V7 929 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 CSNK1A1LQ8N752 337 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 FBXO8Q9NRD0 319 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 MGAT4AQ9UM21 535 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 PLEKHA6Q9Y2H5 1048 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 OR2A25A4D2G3 310 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 ANTXRLA6NF34 631 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 JUNDP17535 347 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 IL1RNP18510 177 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 RAB3BP20337 219 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 POLR2IP36954 125 aaKnown RBP13.07□□□□□ -0.32
SYNPO-205ENST00000522122 EMP3P54852 163 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 KDM4DQ6B0I6 523 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 VWA5B2Q8N398 1253 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 SLC41A3Q96GZ6 507 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 TREM1Q9NP99 234 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 FBXO9Q9UK97 447 aaPredicted RBP13.07□□□□□ -0.32
SYNPO-205ENST00000522122 OR1A2Q9Y585 309 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 HYKKA2RU49 373 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 HMGB3O15347 200 aaKnown RBP13.07□□□□□ -0.32
SYNPO-205ENST00000522122 ZNF208O43345 1280 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 CASP3P42574 277 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 RGS6P49758 472 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 ELOAQ14241 798 aaKnown RBP13.07□□□□□ -0.32
SYNPO-205ENST00000522122 ATXN7L3Q14CW9 347 aaPredicted RBP13.07□□□□□ -0.32
SYNPO-205ENST00000522122 DUS1LQ6P1R4 473 aaKnown RBP13.07□□□□□ -0.32
SYNPO-205ENST00000522122 KCTD9Q7L273 389 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 CPXM2Q8N436 756 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 POTEKPQ9BYX7 375 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 IL21RQ9HBE5 538 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 LHX3Q9UBR4 397 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 C12orf71A8MTZ7 269 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 M0R129 80 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 PRR35P0CG20 571 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 IDUAP35475 653 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 CSNK1DP48730 415 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 C8orf82Q6P1X6 216 aaPredicted RBP13.07□□□□□ -0.32
SYNPO-205ENST00000522122 LRRN1Q6UXK5 716 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 OR52E2Q8NGJ4 325 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 TMEM234Q8WY98 164 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 HYLS1Q96M11 299 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 CNN2Q99439 309 aaKnown RBP13.07□□□□□ -0.32
SYNPO-205ENST00000522122 MYNNQ9NPC7 610 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 UBQLN2Q9UHD9 624 aa13.07□□□□□ -0.32
SYNPO-205ENST00000522122 TAPBPO15533 448 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 KCNJ13O60928 360 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 KLF8O95600 359 aaPredicted RBP13.06□□□□□ -0.32
SYNPO-205ENST00000522122 MAN2A2P49641 1150 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 CTSCP53634 463 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 RIPPLY1Q0D2K3 151 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 ALG10BQ5I7T1 473 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 AGAP6Q5VW22 663 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 LCTLQ6UWM7 567 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 CPOQ8IVL8 374 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 SLC7A5P1Q8MH63 180 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 RPL3LQ92901 407 aaKnown RBP13.06□□□□□ -0.32
SYNPO-205ENST00000522122 MS4A4AQ96JQ5 239 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 SAMD8Q96LT4 415 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 AGAP4Q96P64 663 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 NANSQ9NR45 359 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 IL37Q9NZH6 218 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 COPZ2Q9P299 210 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 PSORS1C1Q9UIG5 152 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 RP2O75695 350 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 PRLP01236 227 aa13.06□□□□□ -0.32
SYNPO-205ENST00000522122 GNSP15586 552 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms