RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 PRTGQ2VWP7 1150 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 GPAT3Q53EU6 434 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 ZNF311Q5JNZ3 666 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 KLHL35Q6PF15 583 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 TSSK4Q6SA08 328 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 FRRS1Q6ZNA5 592 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 AHSA2Q719I0 299 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 TUBA1AQ71U36 451 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 TAF8Q7Z7C8 310 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 ZER1Q7Z7L7 766 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 CLDN22Q8N7P3 220 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 OR4K5Q8NGD3 323 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 ADAMTS18Q8TE60 1221 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 BORCS5Q969J3 196 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 SLC35B4Q969S0 331 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 GTPBP3Q969Y2 492 aaKnown RBP10.04□□□□□ -0.8
USP4-214ENST00000491791 FCRL4Q96PJ5 515 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 DCUN1D5Q9BTE7 237 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 ZNF350Q9GZX5 532 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 TCEAL2Q9H3H9 227 aaPredicted RBP10.04□□□□□ -0.8
USP4-214ENST00000491791 LMAN1LQ9HAT1 526 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 CLN6Q9NWW5 311 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 KLHL28Q9NXS3 571 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 AASSQ9UDR5 926 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 WARS2Q9UGM6 360 aaKnown RBP10.04□□□□□ -0.8
USP4-214ENST00000491791 CYP8B1Q9UNU6 501 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 KCNE3Q9Y6H6 103 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 ACACBO00763 2458 aa10.04□□□□□ -0.8
USP4-214ENST00000491791 TRBV23OR9-2A0A075B6M9 112 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 A0A1W2PS29 197 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 AGAP5A6NIR3 686 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 M0R082 166 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 KLF4O43474 513 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 OR10H3O60404 316 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 FOXD2O60548 495 aaPredicted RBP10.03□□□□□ -0.8
USP4-214ENST00000491791 LRP3O75074 770 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 NME6O75414 186 aaPredicted RBP10.03□□□□□ -0.8
USP4-214ENST00000491791 CYP7B1O75881 506 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 ZIC2O95409 532 aaPredicted RBP10.03□□□□□ -0.8
USP4-214ENST00000491791 CSF2P04141 144 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 SLC35E2P0CK97 266 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 C8orf89P0DMQ9 161 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 CTSEP14091 401 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 NME1P15531 152 aaKnown RBP10.03□□□□□ -0.8
USP4-214ENST00000491791 IFNA8P32881 189 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 STT3AP46977 705 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 CXCL12P48061 93 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 GIPRP48546 466 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 IDH2P48735 452 aaKnown RBP10.03□□□□□ -0.8
USP4-214ENST00000491791 PRKAG1P54619 331 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 RAB38P57729 211 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 SNRPNP63162 240 aaKnown RBP10.03□□□□□ -0.8
USP4-214ENST00000491791 SKP1P63208 163 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 ST3GAL3Q11203 375 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 ST3GAL4Q11206 333 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 MAP4K2Q12851 820 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 TSPAN31Q12999 210 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 PIN1Q13526 163 aaPredicted RBP10.03□□□□□ -0.8
USP4-214ENST00000491791 SPCS2Q15005 226 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 ZSWIM7Q19AV6 140 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 PRICKLE4Q2TBC4 344 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 DEFB134Q4QY38 66 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 EIPR1Q53HC9 387 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 GARNL3Q5VVW2 1013 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 PLAG1Q6DJT9 500 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 TYW3Q6IPR3 259 aaKnown RBP10.03□□□□□ -0.8
USP4-214ENST00000491791 OGFOD3Q6PK18 319 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 FAM111BQ6SJ93 734 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 DEF8Q6ZN54 512 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 Q6ZS52 159 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 PTCHD4Q6ZW05 846 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 ZNF367Q7RTV3 350 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 C16orf62Q7Z3J2 963 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 SLC46A3Q7Z3Q1 461 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 CARFQ8N187 725 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 CA13Q8N1Q1 262 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 CSNK1A1LQ8N752 337 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 CDRT4Q8N9R6 151 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 TSTD1Q8NFU3 115 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 OR52P1PQ8NH57 321 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 DYNC2LI1Q8TCX1 351 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 GNPDA2Q8TDQ7 276 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 ZDHHC1Q8WTX9 485 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 SDF2Q99470 211 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 RHNO1Q9BSD3 238 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 LRRC61Q9BV99 259 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 GPR174Q9BXC1 333 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 SIAEQ9HAT2 523 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 FBXO8Q9NRD0 319 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 RHCGQ9UBD6 479 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 EPHA6Q9UF33 1036 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 ZNF232Q9UNY5 417 aa10.03□□□□□ -0.8
USP4-214ENST00000491791 CCDC88CQ9P219 2028 aa10.02□□□□□ -0.8
USP4-214ENST00000491791 A0A087WUU8 490 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 HYKKA2RU49 373 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 TTC36A6NLP5 189 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 TMX2-CTNND1H3BSU7 103 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 M0R3H8 397 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 TPST2O60704 377 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 NKX2-2O95096 273 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms