RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TSPAN31Q12999 210 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 ATAD3CQ5T2N8 411 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 SLC30A6Q6NXT4 461 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 VITQ6UXI7 678 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 RAB43Q86YS6 212 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 OR4F15Q8NGB8 312 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 KATNB1Q9BVA0 655 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 BTBD1Q9H0C5 482 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 PHPT1Q9NRX4 125 aaPredicted RBP16.83■□□□□ 0.28
VIM-206ENST00000487938 ZNF221Q9UK13 617 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 RWDD3Q9Y3V2 267 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 N6AMT1Q9Y5N5 214 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 PROM1O43490 865 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 PRICKLE3O43900 615 aaPredicted RBP16.82■□□□□ 0.28
VIM-206ENST00000487938 TMCC2O75069 709 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 LALBAP00709 142 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 LIMS3P0CW19 117 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 LIMS4P0CW20 117 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 SLC9A3P48764 834 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 BTN3A2P78410 334 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 TRAM2Q15035 370 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 C2orf27AQ580R0 203 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 OR52P1PQ8NH57 321 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 COL26A1Q96A83 441 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 MSLNLQ96KJ4 702 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 SLC38A2Q96QD8 506 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 MRPS18AQ9NVS2 196 aaKnown RBP16.82■□□□□ 0.28
VIM-206ENST00000487938 MDC1Q14676 2089 aaKnown RBP16.82■□□□□ 0.28
VIM-206ENST00000487938 STK25O00506 426 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 SLC30A4O14863 429 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 GUCY1B2O75343 617 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 ZIC2O95409 532 aaPredicted RBP16.82■□□□□ 0.28
VIM-206ENST00000487938 CSF3P09919 207 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 TCEA1P23193 301 aaKnown RBP16.82■□□□□ 0.28
VIM-206ENST00000487938 MAT2AP31153 395 aaKnown RBP16.82■□□□□ 0.28
VIM-206ENST00000487938 GPR4P46093 362 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 OMPP47874 163 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 SNRPNP63162 240 aaKnown RBP16.82■□□□□ 0.28
VIM-206ENST00000487938 SCN1BQ07699 218 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 MINDY4Q4G0A6 757 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 C16orf62Q7Z3J2 963 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 CLDN22Q8N7P3 220 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 KCT2Q8NC54 265 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 OR4Q3Q8NH05 313 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 GANCQ8TET4 914 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 DIO2Q92813 273 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 UFD1Q92890 307 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 DMRTB1Q96MA1 342 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 ARHGDIGQ99819 225 aa16.82■□□□□ 0.28
VIM-206ENST00000487938 MOV10Q9HCE1 1003 aaKnown RBP16.82■□□□□ 0.28
VIM-206ENST00000487938 TMEM129A0AVI4 362 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 SNTNA6NMZ2 147 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 ISM1B1AKI9 464 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 ASGR2P07307 311 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 IFNGR2P38484 337 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 PDX1P52945 283 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 ST3GAL3Q11203 375 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 SGCGQ13326 291 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 TPBGQ13641 420 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 RUNX3Q13761 415 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 PYDC2Q56P42 97 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 PDZK1Q5T2W1 519 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 RASSF6Q6ZTQ3 369 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 SIMC1Q8NDZ2 872 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 PHOSPHO2Q8TCD6 241 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 SLC35A4Q96G79 324 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 DCLRE1CQ96SD1 692 aaKnown RBP16.81■□□□□ 0.28
VIM-206ENST00000487938 DDX28Q9NUL7 540 aaKnown RBP16.81■□□□□ 0.28
VIM-206ENST00000487938 COMMD3Q9UBI1 195 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 GRIP1Q9Y3R0 1128 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 ZNF780BQ9Y6R6 833 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 PIP5K1CO60331 668 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 SLC2A10O95528 541 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 CDH11P55287 796 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 CLDN2P57739 230 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 INSL4Q14641 139 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 XKRXQ6PP77 449 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 OR4E2Q8NGC2 313 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 PIGXQ8TBF5 258 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 DOK4Q8TEW6 326 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 ZNF681Q96N22 645 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 ARHGAP9Q9BRR9 750 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 HDHD5Q9BXW7 423 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 MCOLN1Q9GZU1 580 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 TBC1D17Q9HA65 648 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 GIMAP4Q9NUV9 329 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 NPAP1Q9NZP6 1156 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 DPP7Q9UHL4 492 aa16.81■□□□□ 0.28
VIM-206ENST00000487938 MEIOCA2RUB1 952 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 KDM4EB2RXH2 506 aaPredicted RBP16.8■□□□□ 0.28
VIM-206ENST00000487938 C5orf67F2Z3F1 127 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 CSF2P04141 144 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 THY1P04216 161 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 EIF2S1P05198 315 aaKnown RBP16.8■□□□□ 0.28
VIM-206ENST00000487938 AHRP35869 848 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 RPE65Q16518 533 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 DDI2Q5TDH0 399 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 QSOX2Q6ZRP7 698 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 MRGPREQ86SM8 312 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 SLC16A11Q8NCK7 471 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms