RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 PRODH2Q9UF12 536 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 PURGQ9UJV8 347 aaKnown RBP2.73□□□□□ -1.97
VPS41-207ENST00000439468 FOXJ3Q9UPW0 622 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 MRPL11Q9Y3B7 192 aaKnown RBP2.73□□□□□ -1.97
VPS41-207ENST00000439468 MTF2Q9Y483 593 aaPredicted RBP2.73□□□□□ -1.97
VPS41-207ENST00000439468 CSAG2Q9Y5P2 127 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 NUP160Q12769 1436 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 TTC26A0AVF1 554 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 LRIT2A6NDA9 550 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 ZNF840PA6NDX5 716 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 MFSD2BA6NFX1 497 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 ANKRD30BLA7E2S9 258 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 ZNF487B1APH4 448 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 PDLIM1O00151 329 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 PDXKO00764 312 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 SDHDO14521 159 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 BUB1O43683 1085 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 TOM1L1O75674 476 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 TRIM16O95361 564 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 ANXA4P09525 319 aaPredicted RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 RRASP10301 218 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 NCF1P14598 390 aaPredicted RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 ARF4P18085 180 aaPredicted RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 CYP2F1P24903 491 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 PGFP49763 221 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 GPC3P51654 580 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 HMGCS2P54868 508 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 MRPS6P82932 125 aaKnown RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 PEX6Q13608 980 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 EXOSC2Q13868 293 aaKnown RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 NCAPD2Q15021 1401 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 INAQ16352 499 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 CNPY1Q3B7I2 92 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 MS4A13Q5J8X5 152 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 C12orf60Q5U649 245 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 OLFM4Q6UX06 510 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 CCBE1Q6UXH8 406 aaPredicted RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 ZNF562Q6V9R5 426 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 P4HA3Q7Z4N8 544 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 RANBP3LQ86VV4 465 aaPredicted RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 CCDC36Q8IYA8 594 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 FGFRL1Q8N441 504 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 ART4Q93070 314 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 TOMM40LQ969M1 308 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 TESK2Q96S53 571 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 RPP25Q9BUL9 199 aaKnown RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 RBM24Q9BX46 236 aaKnown RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 KAT8Q9H7Z6 458 aaKnown RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 VAT1LQ9HCJ6 419 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 MEPEQ9NQ76 525 aaPredicted RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 ABCC13Q9NSE7 274 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 CENPMQ9NSP4 180 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 DCAF13Q9NV06 445 aaKnown RBP2.72□□□□□ -1.97
VPS41-207ENST00000439468 ATXN10Q9UBB4 475 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 GHRLQ9UBU3 117 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 ABCC2Q92887 1545 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 METP08581 1390 aa2.72□□□□□ -1.97
VPS41-207ENST00000439468 TEX14Q8IWB6 1497 aa2.71□□□□□ -1.97
VPS41-207ENST00000439468 FRMPD1Q5SYB0 1578 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 A0A087WWV3 80 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 FAM230AA0A1W2PPH8 454 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 E9PAM4 449 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 CASKO14936 926 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 CHADO15335 359 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 TYROBPO43914 113 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 ZNF354AO60765 605 aaPredicted RBP2.71□□□□□ -1.98
VPS41-207ENST00000439468 VPS26AO75436 327 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 NUDT14O95848 222 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 PIGRP01833 764 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 ALPIP09923 528 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 FAM200BP0CF97 657 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 CYLC1P35663 651 aaPredicted RBP2.71□□□□□ -1.98
VPS41-207ENST00000439468 DLSTP36957 453 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 PTGFRP43088 359 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 NUMBP49757 651 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 HERVK_113P63132 956 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 ERVK-8P63133 956 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 BNIP1Q12981 228 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 DPYSQ14117 519 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 TFDP1Q14186 410 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 TRIP10Q15642 601 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 VWA2Q5GFL6 755 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 FAM182AQ5T1J6 154 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 DMKNQ6E0U4 476 aaPredicted RBP2.71□□□□□ -1.98
VPS41-207ENST00000439468 HACD2Q6Y1H2 254 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 PAQR9Q6ZVX9 377 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 CYS1Q717R9 158 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 TMUB2Q71RG4 321 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 LPCAT2Q7L5N7 544 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 CATSPER4Q7RTX7 472 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 TSEN54Q7Z6J9 526 aaKnown RBP2.71□□□□□ -1.98
VPS41-207ENST00000439468 LHFPL4Q7Z7J7 247 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 MISPQ8IVT2 679 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 CERS5Q8N5B7 392 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 NFAM1Q8NET5 270 aaPredicted RBP2.71□□□□□ -1.98
VPS41-207ENST00000439468 RFESDQ8TAC1 157 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 TAF4BQ92750 862 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 ADIPOR1Q96A54 375 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 SLC25A36Q96CQ1 311 aa2.71□□□□□ -1.98
VPS41-207ENST00000439468 C11orf24Q96F05 449 aaPredicted RBP2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms