RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 COX10Q12887 443 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 DUSP5Q16690 384 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 C14orf28Q4W4Y0 310 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 PODNL1Q6PEZ8 512 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 VRK2Q86Y07 508 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 CDRT4Q8N9R6 151 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 DNASE2BQ8WZ79 361 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 RORBQ92753 470 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 CTHRC1Q96CG8 243 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 QRSL1Q9H0R6 528 aaKnown RBP20.62■□□□□ 0.89
PNKP-220ENST00000627232 ANKRD19PQ9H560 264 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 LIN28AQ9H9Z2 209 aaKnown RBP20.62■□□□□ 0.89
PNKP-220ENST00000627232 TIMMDC1Q9NPL8 285 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 DUSP22Q9NRW4 184 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 MAN2C1Q9NTJ4 1040 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 FKBP14Q9NWM8 211 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 EPHA6Q9UF33 1036 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 NDOR1Q9UHB4 597 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 PLCL2Q9UPR0 1127 aa20.62■□□□□ 0.89
PNKP-220ENST00000627232 SCN2AQ99250 2005 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 TLCD2A6NGC4 264 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 SOX30O94993 753 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 AK1P00568 194 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 RNH1P13489 461 aaKnown RBP20.61■□□□□ 0.89
PNKP-220ENST00000627232 GSSP48637 474 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 FAM53BQ14153 422 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 INAVAQ3KP66 663 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 GARNL3Q5VVW2 1013 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 TYW3Q6IPR3 259 aaKnown RBP20.61■□□□□ 0.89
PNKP-220ENST00000627232 WDR53Q7Z5U6 358 aaPredicted RBP20.61■□□□□ 0.89
PNKP-220ENST00000627232 PEX5LQ8IYB4 626 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 PMM1Q92871 262 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 MYDGFQ969H8 173 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 SDF2Q99470 211 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 NAA50Q9GZZ1 169 aaKnown RBP20.61■□□□□ 0.89
PNKP-220ENST00000627232 GPN2Q9H9Y4 310 aaPredicted RBP20.61■□□□□ 0.89
PNKP-220ENST00000627232 ZNF232Q9UNY5 417 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 WDR45Q9Y484 360 aa20.61■□□□□ 0.89
PNKP-220ENST00000627232 NME6O75414 186 aaPredicted RBP20.6■□□□□ 0.89
PNKP-220ENST00000627232 ATE1O95260 518 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 THBS1P07996 1170 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 ACVR2AP27037 513 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 IFNA8P32881 189 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 GP2P55259 537 aaKnown RBP20.6■□□□□ 0.89
PNKP-220ENST00000627232 DEFB133Q30KQ1 61 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 HMGN2P46Q86SG4 172 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 CCDC103Q8IW40 242 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 MORN4Q8NDC4 146 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 OR6C4Q8NGE1 309 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 ZG16BQ96DA0 208 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 CD180Q99467 661 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 BCL7BQ9BQE9 202 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 SAP130Q9H0E3 1048 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 ADAP2Q9NPF8 381 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 ZNF443Q9Y2A4 671 aaPredicted RBP20.6■□□□□ 0.89
PNKP-220ENST00000627232 CHST2Q9Y4C5 530 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 UNC80Q8N2C7 3258 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 CACNA1IQ9P0X4 2223 aa20.6■□□□□ 0.89
PNKP-220ENST00000627232 SH3D21A4FU49 640 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 CLCA1A8K7I4 914 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 FCMRO60667 390 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 PIAS2O75928 621 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 INMTO95050 263 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 NSA2O95478 260 aaKnown RBP20.59■□□□□ 0.89
PNKP-220ENST00000627232 CTSBP07858 339 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 BCKDHBP21953 392 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 MAP3K8P41279 467 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 CTSKP43235 329 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 CXCL12P48061 93 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 MASP1P48740 699 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 C21orf59P57076 290 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 ZP2Q05996 745 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 FOXD4Q12950 439 aaPredicted RBP20.59■□□□□ 0.89
PNKP-220ENST00000627232 TARDBPQ13148 414 aaKnown RBP eCLIP20.59■□□□□ 0.89
PNKP-220ENST00000627232 DUSP8Q13202 625 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 LARS2Q15031 903 aaKnown RBP20.59■□□□□ 0.89
PNKP-220ENST00000627232 EIPR1Q53HC9 387 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 SYT6Q5T7P8 510 aaPredicted RBP20.59■□□□□ 0.89
PNKP-220ENST00000627232 SLX4IPQ5VYV7 408 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 C1orf94Q6P1W5 598 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 AHSA2Q719I0 299 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 SIMC1Q8NDZ2 872 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 ZNF350Q9GZX5 532 aa20.59■□□□□ 0.89
PNKP-220ENST00000627232 POLR2J3Q9H1A7 115 aaKnown RBP20.59■□□□□ 0.89
PNKP-220ENST00000627232 DUSP15Q9H1R2 295 aaPredicted RBP20.59■□□□□ 0.89
PNKP-220ENST00000627232 MRPS33Q9Y291 106 aaKnown RBP20.59■□□□□ 0.89
PNKP-220ENST00000627232 K7ESF4 209 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 FOXS1O43638 330 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 COQ9O75208 318 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 CCNA2P20248 432 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 GSTM3P21266 225 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 RPS4Y1P22090 263 aaKnown RBP20.58■□□□□ 0.89
PNKP-220ENST00000627232 CNR2P34972 360 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 MLLT3P42568 568 aaPredicted RBP20.58■□□□□ 0.89
PNKP-220ENST00000627232 TAS2R41P59536 307 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 MAP4K2Q12851 820 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 TRAM2Q15035 370 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 TCTE1Q5JU00 501 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 WDR45BQ5MNZ6 344 aa20.58■□□□□ 0.89
PNKP-220ENST00000627232 AP1ARQ63HQ0 302 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms