RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 HNRNPCL4P0DMR1 293 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 ETS2P15036 469 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 TNNI3P19429 210 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 CHRNEQ04844 493 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 GNA13Q14344 377 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 LRRC36Q1X8D7 754 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 GPAT3Q53EU6 434 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 DCAF12Q5T6F0 453 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 HES3Q5TGS1 186 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 MLIPQ5VWP3 458 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 FAM198BQ6UWH4 519 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 ZSCAN1Q8NBB4 408 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 ZNF721Q8TF20 911 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 PIK3R3Q92569 461 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 ZG16BQ96DA0 208 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 COL21A1Q96P44 957 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 PHOX2BQ99453 314 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 SDF2Q99470 211 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 BTBD2Q9BX70 525 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 EXD2Q9NVH0 621 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 SATB2Q9UPW6 733 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 CLOCKO15516 846 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 IFNA14P01570 189 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 TNFRSF1BP20333 461 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 LIMK1P53667 647 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 SLC37A1P57057 533 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 ATAD3BQ5T9A4 648 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 AP1ARQ63HQ0 302 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 FAM199XQ6PEV8 388 aaPredicted RBP13.25□□□□□ -0.29
USP39-220ENST00000613444 FRRS1Q6ZNA5 592 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 C16orf62Q7Z3J2 963 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 PIWIL3Q7Z3Z3 882 aaKnown RBP13.25□□□□□ -0.29
USP39-220ENST00000613444 COMTD1Q86VU5 262 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 EPHX4Q8IUS5 362 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 ZDHHC21Q8IVQ6 265 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 OR7G1Q8NGA0 311 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 DEPDC7Q96QD5 511 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 ZNF607Q96SK3 696 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 TACO1Q9BSH4 297 aaKnown RBP13.25□□□□□ -0.29
USP39-220ENST00000613444 SPRY4Q9C004 299 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 ABCG2Q9UNQ0 655 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 GXYLT2A0PJZ3 443 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 PEX1O43933 1283 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 LDLRP01130 860 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 AGXTP21549 392 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 KCNJ5P48544 419 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 ZNF155Q12901 538 aaPredicted RBP13.25□□□□□ -0.29
USP39-220ENST00000613444 PUM1Q14671 1186 aaKnown RBP eCLIP13.25□□□□□ -0.29
USP39-220ENST00000613444 CYP27C1Q4G0S4 372 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 CCNJQ5T5M9 372 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 TYW3Q6IPR3 259 aaKnown RBP13.25□□□□□ -0.29
USP39-220ENST00000613444 NPSR1Q6W5P4 371 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 FKBP9P1Q75LS8 142 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 ASCL5Q7RTU5 278 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 ARMC8Q8IUR7 673 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 SLC2A12Q8TD20 617 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 TAAR9Q96RI9 348 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 DDA1Q9BW61 102 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 ZNF350Q9GZX5 532 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 QRSL1Q9H0R6 528 aaKnown RBP13.25□□□□□ -0.29
USP39-220ENST00000613444 YY1AP1Q9H869 796 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 WDR54Q9H977 334 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 FBXO34Q9NWN3 711 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 PISDQ9UG56 409 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 PADI2Q9Y2J8 665 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 CLCA3PQ9Y6N3 262 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 PTPRBP23467 1997 aa13.25□□□□□ -0.29
USP39-220ENST00000613444 CCDC187A0A096LP49 1063 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 SYNDIG1LA6NDD5 238 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 C9orf172C9J069 976 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 PLD2O14939 933 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 ACOX3O15254 700 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 EPPINO95925 133 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 KLK3P07288 261 aaPredicted RBP13.24□□□□□ -0.29
USP39-220ENST00000613444 CT45A8P0DMV1 189 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 CT45A9P0DMV2 189 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 CDK4P11802 303 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 ZNF26P17031 533 aaPredicted RBP13.24□□□□□ -0.29
USP39-220ENST00000613444 GABRA3P34903 492 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 GPR143P51810 404 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 CT45A2Q5DJT8 189 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 DCST2Q5T1A1 773 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 ANKRD37Q7Z713 158 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 GALNT6Q8NCL4 622 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 OR14A16Q8NHC5 309 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 GPR151Q8TDV0 419 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 LZICQ8WZA0 190 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 ZPBPQ9BS86 351 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 SAP130Q9H0E3 1048 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 CALML5Q9NZT1 146 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 DNAJB9Q9UBS3 223 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 PCDHGA3Q9Y5H0 932 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 SPAARA0A1B0GVQ0 90 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 hCG_2039718K7EN88 272 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 TM4SF5O14894 197 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 ALOX12BO75342 701 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 DEAF1O75398 565 aaPredicted RBP13.24□□□□□ -0.29
USP39-220ENST00000613444 SERPINB7O75635 380 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 STK17BO94768 372 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 CST1P01037 141 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms