RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 PSPHP78330 225 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 SRYQ05066 204 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 CSTF3Q12996 717 aaKnown RBP21.72■■□□□ 1.07
LSM4-202ENST00000593564 KEAP1Q14145 624 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 DEFB113Q30KQ7 82 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 SCIMPQ6UWF3 145 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 CDYL2Q8N8U2 506 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 RDH11Q8TC12 318 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 DTNBP1Q96EV8 351 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 G6PC3Q9BUM1 346 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 ACBD3Q9H3P7 528 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 PFDN4Q9NQP4 134 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 GALNT8Q9NY28 637 aa21.72■■□□□ 1.07
LSM4-202ENST00000593564 POC1B-GALNT4F8VUJ3 575 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 REM1O75628 298 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 KRT6AP02538 564 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 KRT6BP04259 564 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 CT45A8P0DMV1 189 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 CT45A9P0DMV2 189 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 DRD2P14416 443 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 KRT6CP48668 564 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 LHX2P50458 406 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 RASA2Q15283 850 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 CT45A2Q5DJT8 189 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 TCHHL1Q5QJ38 904 aaPredicted RBP21.71■■□□□ 1.07
LSM4-202ENST00000593564 AAGABQ6PD74 315 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 CCDC116Q8IYX3 515 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 SAMD14Q8IZD0 417 aaPredicted RBP21.71■■□□□ 1.07
LSM4-202ENST00000593564 GBP7Q8N8V2 638 aaPredicted RBP21.71■■□□□ 1.07
LSM4-202ENST00000593564 INTS12Q96CB8 462 aaKnown RBP21.71■■□□□ 1.07
LSM4-202ENST00000593564 VSTM2LQ96N03 204 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 FMO2Q99518 471 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 PIGMQ9H3S5 423 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 FBXL2Q9UKC9 423 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 DLGAP4Q9Y2H0 992 aa21.71■■□□□ 1.07
LSM4-202ENST00000593564 RPH3AQ9Y2J0 694 aaPredicted RBP21.71■■□□□ 1.07
LSM4-202ENST00000593564 MRPS18CQ9Y3D5 142 aaKnown RBP21.71■■□□□ 1.07
LSM4-202ENST00000593564 TSPAN2O60636 221 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 HRGP04196 525 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 IL3P08700 152 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 CHMP24386 653 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 CPA2P48052 419 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 EEF1A1P68104 462 aaKnown RBP21.7■■□□□ 1.06
LSM4-202ENST00000593564 EFR3AQ14156 821 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 EEF1A1P5Q5VTE0 462 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 LUZP2Q86TE4 346 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 OR9A2Q8NGT5 310 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 RNF138Q8WVD3 245 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 ZNF382Q96SR6 550 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 ADOQ96SZ5 270 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 ANKRA2Q9H9E1 313 aa21.7■■□□□ 1.06
LSM4-202ENST00000593564 DMGDHQ9UI17 866 aaKnown RBP21.7■■□□□ 1.06
LSM4-202ENST00000593564 PLOD2O00469 737 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 PCDH7O60245 1069 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 SNRPAP09012 282 aaKnown RBP21.69■■□□□ 1.06
LSM4-202ENST00000593564 CHN1P15882 459 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 ZNF708P17019 499 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 STARP49675 285 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 CLDN18P56856 261 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 CORO7P57737 925 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 RAE1P78406 368 aaKnown RBP21.69■■□□□ 1.06
LSM4-202ENST00000593564 GAB1Q13480 694 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 WHAMMP3Q1A5X7 153 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 ERCC6LQ2NKX8 1250 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 UNC50Q53HI1 259 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 ZNF678Q5SXM1 525 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 PLXDC2Q6UX71 529 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 KAT2AQ92830 837 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 EXOSC8Q96B26 276 aaKnown RBP21.69■■□□□ 1.06
LSM4-202ENST00000593564 SFXN2Q96NB2 322 aa21.69■■□□□ 1.06
LSM4-202ENST00000593564 GSX1Q9H4S2 264 aaPredicted RBP21.69■■□□□ 1.06
LSM4-202ENST00000593564 A0A087WUV0 522 aaPredicted RBP21.68■■□□□ 1.06
LSM4-202ENST00000593564 SH3D21A4FU49 640 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 ULK1O75385 1050 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 SUPT7LO94864 414 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 TAC1P20366 129 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 ECHS1P30084 290 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 KRT20P35900 424 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 SPIN4Q56A73 249 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 TEX35Q5T0J7 233 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 NPSR1Q6W5P4 371 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 GPRIN3Q6ZVF9 776 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 LARP4Q71RC2 724 aaKnown RBP eCLIP21.68■■□□□ 1.067e-6■□□□□ 9
LSM4-202ENST00000593564 GCNT2Q8N0V5 402 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 MMGT1Q8N4V1 131 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 UHMK1Q8TAS1 419 aaKnown RBP21.68■■□□□ 1.06
LSM4-202ENST00000593564 IFT81Q8WYA0 676 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 SMPDL3BQ92485 455 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 TMEM237Q96Q45 408 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 ACPTQ9BZG2 426 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 FOLH1BQ9HBA9 442 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 GIMAP4Q9NUV9 329 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 DKKL1Q9UK85 242 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 PACSIN3Q9UKS6 424 aa21.68■■□□□ 1.06
LSM4-202ENST00000593564 TNFSF12-TNFSF13A0A0A6YY99 330 aa21.67■■□□□ 1.06
LSM4-202ENST00000593564 GNG14A0A1W2PPG7 69 aa21.67■■□□□ 1.06
LSM4-202ENST00000593564 A8MXE2 369 aa21.67■■□□□ 1.06
LSM4-202ENST00000593564 HCRTR2O43614 444 aa21.67■■□□□ 1.06
LSM4-202ENST00000593564 PLOD3O60568 738 aa21.67■■□□□ 1.06
LSM4-202ENST00000593564 NME6O75414 186 aaPredicted RBP21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms