RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 MAMDC2Q7Z304 686 aaPredicted RBP12.29□□□□□ -0.44
CLK3-213ENST00000563842 OR2L13Q8N349 312 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 LIX1Q8N485 282 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 ZNF781Q8N8C0 355 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 SIMC1Q8NDZ2 872 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 CLHC1Q8NHS4 586 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 RAB3IL1Q8TBN0 382 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 TLCD1Q96CP7 247 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 C3orf30Q96M34 536 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 JSRP1Q96MG2 331 aaPredicted RBP12.29□□□□□ -0.44
CLK3-213ENST00000563842 RILPQ96NA2 401 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 COL21A1Q96P44 957 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 EXO5Q9H790 373 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 C3orf14Q9HBI5 128 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 PROK2Q9HC23 129 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 PLEKHB1Q9UF11 243 aaPredicted RBP12.29□□□□□ -0.44
CLK3-213ENST00000563842 ATP6V1HQ9UI12 483 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 HAO1Q9UJM8 370 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 TINAGQ9UJW2 476 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 OR10H1Q9Y4A9 318 aa12.29□□□□□ -0.44
CLK3-213ENST00000563842 NOTCH2Q04721 2471 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 A0A1B0GVC2 190 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 ENO4A6NNW6 628 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 E9PLN8 166 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 UPK1AO00322 258 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 AQP7O14520 342 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 BCKDKO14874 412 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 SCAMP2O15127 329 aaKnown RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 ZG16O60844 167 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 TRIM3O75382 744 aaPredicted RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 CT45A8P0DMV1 189 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 CT45A9P0DMV2 189 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 PRPS1L1P21108 318 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 ELAVL4P26378 380 aaKnown RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 FRKP42685 505 aaPredicted RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 PSMD4P55036 377 aaKnown RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 EMX2Q04743 252 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 HSPB3Q12988 150 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 MLC1Q15049 377 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 PDCD2Q16342 344 aaPredicted RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 PRSS53Q2L4Q9 553 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 VPS26BQ4G0F5 336 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 CYP27C1Q4G0S4 372 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 CT45A2Q5DJT8 189 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 TMEM211Q6ICI0 200 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 XKRXQ6PP77 449 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 TRILQ7L0X0 811 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 ZNF551Q7Z340 670 aaPredicted RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 DOLPP1Q86YN1 238 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 SLC44A2Q8IWA5 706 aaPredicted RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 CHERPQ8IWX8 916 aaKnown RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 LRRC34Q8IZ02 419 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 ZNF808Q8N4W9 903 aaPredicted RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 PHF10Q8WUB8 498 aaKnown RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 HGDQ93099 445 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 TMBIM1Q969X1 311 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 SARAFQ96BY9 339 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 ZBTB9Q96C00 473 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 SLC35A4Q96G79 324 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 CCDC120Q96HB5 630 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 TMEM41AQ96HV5 264 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 VKORC1Q9BQB6 163 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 TP63Q9H3D4 680 aaPredicted RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 ZNF703Q9H7S9 590 aaPredicted RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 ANKRA2Q9H9E1 313 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 Q9N2J8 555 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 ACKR4Q9NPB9 350 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 THAP1Q9NVV9 213 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 NOP53Q9NZM5 478 aaKnown RBP12.28□□□□□ -0.44
CLK3-213ENST00000563842 KLRF1Q9NZS2 232 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 MEMO1Q9Y316 297 aa12.28□□□□□ -0.44
CLK3-213ENST00000563842 TRGV5A0A0B4J1U4 118 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 UGT2B11O75310 529 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 RNF224P0DH78 156 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 AGAP20933 346 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 GDF1P27539 372 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 WDR4P57081 412 aaKnown RBP12.27□□□□□ -0.45
CLK3-213ENST00000563842 PRR5P85299 388 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 BST1Q10588 318 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 DECR1Q16698 335 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 LSM12Q3MHD2 195 aaKnown RBP12.27□□□□□ -0.45
CLK3-213ENST00000563842 CPTPQ5TA50 214 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 CES4AQ5XG92 561 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 ANKRD26P1Q6NSI1 321 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 LARP4Q71RC2 724 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLK3-213ENST00000563842 CD163Q86VB7 1156 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 GOLGA6L1Q8N7Z2 621 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 OR1J4Q8NGS1 313 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 MGARPQ8TDB4 240 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 CIDECQ96AQ7 238 aaPredicted RBP12.27□□□□□ -0.45
CLK3-213ENST00000563842 SORT1Q99523 831 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 C1orf50Q9BV19 199 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 OSBPL11Q9BXB4 747 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 ASIC5Q9NY37 505 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 GIMAP2Q9UG22 337 aa12.27□□□□□ -0.45
CLK3-213ENST00000563842 A0A1W2PRB8 838 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 A1L4Q6 167 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 PRAMEF25A6NGN4 478 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 LRRC3CA6NJW4 275 aa12.26□□□□□ -0.45
CLK3-213ENST00000563842 FIGNL2A6NMB9 653 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms