RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 A0A087WUV0 522 aaPredicted RBP11.58□□□□□ -0.56
USP28-212ENST00000544750 H0YIV9 168 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 RIPK2O43353 540 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 KLF4O43474 513 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 ZIC3O60481 467 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 TMCC2O75069 709 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 SMNDC1O75940 238 aaKnown RBP eCLIP11.58□□□□□ -0.56
USP28-212ENST00000544750 THBDP07204 575 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 LTA4HP09960 611 aaKnown RBP11.58□□□□□ -0.56
USP28-212ENST00000544750 MTHFD2P13995 350 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 POU2F1P14859 743 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 KRT15P19012 456 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 PTX3P26022 381 aaPredicted RBP11.58□□□□□ -0.56
USP28-212ENST00000544750 CNTFP26441 200 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 PIK3R1P27986 724 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 SERPINB8P50452 374 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 B3GALT5-AS1P59052 145 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 GUSBP1Q15486 140 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 NNATQ16517 81 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 BCL2A1Q16548 175 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 PRICKLE4Q2TBC4 344 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 TEX35Q5T0J7 233 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 LIPJQ5W064 366 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 HMBOX1Q6NT76 420 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 TRMT10CQ7L0Y3 403 aaKnown RBP11.58□□□□□ -0.56
USP28-212ENST00000544750 TBC1D1Q86TI0 1168 aaPredicted RBP11.58□□□□□ -0.56
USP28-212ENST00000544750 PLCZ1Q86YW0 608 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 PLD6Q8N2A8 252 aaKnown RBP11.58□□□□□ -0.56
USP28-212ENST00000544750 WDR20Q8TBZ3 569 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 RNF138Q8WVD3 245 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 EXT2Q93063 718 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 LCORQ96JN0 433 aaPredicted RBP11.58□□□□□ -0.56
USP28-212ENST00000544750 ITPAQ9BY32 194 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 WDR41Q9HAD4 459 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 NMRAL1Q9HBL8 299 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 TAS2R10Q9NYW0 307 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 NUDT4Q9NZJ9 180 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 OPTCQ9UBM4 332 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 FBXL2Q9UKC9 423 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 ACOT9Q9Y305 439 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 PCDHGA11Q9Y5H2 935 aa11.58□□□□□ -0.56
USP28-212ENST00000544750 FREM1Q5H8C1 2179 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 A0A087X1B8 175 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 A0A096LPK6 155 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 PRAMEF25A6NGN4 478 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 FRG2CA6NGY1 282 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 POC1B-GALNT4F8VUJ3 575 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 C16orf97H3BN30 126 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 UBXN8O00124 270 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 TO15178 435 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 ACOX3O15254 700 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 EMC8O43402 210 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 KERAO60938 352 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 GBAP04062 536 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 S100BP04271 92 aaPredicted RBP11.57□□□□□ -0.56
USP28-212ENST00000544750 INHBAP08476 426 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 CD8BP10966 210 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 CPMP14384 443 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 EPB42P16452 691 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 XKP51811 444 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 NR1H2P55055 460 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 HMGCS1Q01581 520 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 MAP4K2Q12851 820 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 OR2A2Q6IF42 318 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 AAGABQ6PD74 315 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 PODNL1Q6PEZ8 512 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 FAM111BQ6SJ93 734 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 CYP20A1Q6UW02 462 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 SH2D5Q6ZV89 423 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 CCDC91Q7Z6B0 441 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 NUDT13Q86X67 352 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 CNEP1R1Q8N9A8 125 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 EIF1ADQ8N9N8 165 aaKnown RBP11.57□□□□□ -0.56
USP28-212ENST00000544750 OR4K14Q8NGD5 310 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 STAG3L4Q8TBR4 150 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 TMEM171Q8WVE6 324 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 FIG4Q92562 907 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 CAVIN3Q969G5 261 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 ZC3HAV1LQ96H79 300 aaKnown RBP11.57□□□□□ -0.56
USP28-212ENST00000544750 ANKZF1Q9H8Y5 726 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 MAT2BQ9NZL9 334 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 KLRF1Q9NZS2 232 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 ZNF180Q9UJW8 692 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 CES1P1Q9UKY3 287 aa11.57□□□□□ -0.56
USP28-212ENST00000544750 CADP27708 2225 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.56□□□□□ -0.56
USP28-212ENST00000544750 SLC22A20A6NK97 555 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 KLHL2O95198 593 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 CBX7O95931 251 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 PLAUP00749 431 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 PORP16435 677 aaPredicted RBP11.56□□□□□ -0.56
USP28-212ENST00000544750 TYK2P29597 1187 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 SERPINB9P50453 376 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 GAS1P54826 345 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 ATP5J2P56134 94 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 DMTNQ08495 405 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 PLCXD2Q0VAA5 305 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 EXOSC7Q15024 291 aaKnown RBP11.56□□□□□ -0.56
USP28-212ENST00000544750 TECRLQ5HYJ1 363 aa11.56□□□□□ -0.56
USP28-212ENST00000544750 HIPK1Q86Z02 1210 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms