RNA–Protein interactions for RNA: ENST00000533897.1

CTSC-208, Transcript of cathepsin C, human

TSL 2

Gene CTSC, Length 4,344 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSC-208	ENST00000533897	RASSF5	Q8WWW0	418 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	RAB8B	Q92930	207 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	HGD	Q93099	445 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	NXPE3	Q969Y0	559 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	RNFT2	Q96EX2	444 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	MS4A3	Q96HJ5	214 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	TOX2	Q96NM4	488 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	QRFPR	Q96P65	431 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	IL17F	Q96PD4	163 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	F2RL3	Q96RI0	385 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	ZNF426	Q9BUY5	554 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	POLR2J3	Q9H1A7	115 aa	Known RBP	4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	MARCH7	Q9H992	704 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	ZNF556	Q9HAH1	456 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	TDP1	Q9NUW8	608 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	LRFN2	Q9ULH4	789 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	EXOSC1	Q9Y3B2	195 aa	Known RBP	4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	OR5K3	A6NET4	321 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	PRRT4	C9JH25	899 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	RTCA	O00442	366 aa	Known RBP	4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	GABRP	O00591	440 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	PDPK1	O15530	556 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	CHP2	O43745	196 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	VEGFD	O43915	354 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	HPGDS	O60760	199 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	CKM	P06732	381 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	SMIM10L1	P0DMW3	83 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	CFL1	P23528	166 aa	Known RBP	4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	NUDT1	P36639	197 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	CAV3	P56539	151 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	TAS2R38	P59533	333 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	RPS11	P62280	158 aa	Known RBP eCLIP	4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	DHODH	Q02127	395 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	MAP4K2	Q12851	820 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	GINS1	Q14691	196 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	CNIH2	Q6PI25	160 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	PAMR1	Q6UXH9	720 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	SLC36A4	Q6YBV0	504 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	CREB3L2	Q70SY1	520 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	LSR	Q86X29	649 aa	Predicted RBP	4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	SFTPA1	Q8IWL2	248 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	SLC34A3	Q8N130	599 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	ZNF557	Q8N988	423 aa	Predicted RBP	4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	BBS1	Q8NFJ9	593 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	OR11H7	Q8NGC8	314 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	OR2A1	Q8NGT9	310 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	RAET1E	Q8TD07	263 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	BRIX1	Q8TDN6	353 aa	Known RBP	4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	JPH3	Q8WXH2	748 aa	Predicted RBP	4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	CREB3L1	Q96BA8	519 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	AP2M1	Q96CW1	435 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	SMIM10	Q96HG1	83 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	ZNF558	Q96NG5	402 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	DDO	Q99489	341 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	TEX101	Q9BY14	249 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	KLHL31	Q9H511	634 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	SLC6A20	Q9NP91	592 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	C5AR2	Q9P296	337 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897	TMCC3	Q9ULS5	477 aa		4.14	□□□□□ -1.75
CTSC-208	ENST00000533897		A0A0G2JPF8	293 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897		A0A1W2PR48	441 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	HNRNPCL2	B2RXH8	293 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	HNRNPCL3	B7ZW38	293 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	NEDD8-MDP1	E9PL57	170 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	PRRG1	O14668	218 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	TLX2	O43763	284 aa	Predicted RBP	4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	CLEC3A	O75596	197 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	PDE9A	O76083	593 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	ALDH1A1	P00352	501 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	YES1	P07947	543 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	IFI6	P09912	130 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	HNRNPCL4	P0DMR1	293 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	DRD2	P14416	443 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	HOXB3	P14651	431 aa	Predicted RBP	4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	CD53	P19397	219 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	ELK1	P19419	428 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	CHI3L1	P36222	383 aa	Predicted RBP	4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	TRIM23	P36406	574 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	MECP2	P51608	486 aa	Known RBP	4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	RRAS2	P62070	204 aa	Predicted RBP	4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	E2F1	Q01094	437 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	SF3A2	Q15428	464 aa	Known RBP	4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	PIP5KL1	Q5T9C9	394 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	RTL10	Q7L3V2	364 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	ARHGEF39	Q8N4T4	335 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	ANKK1	Q8NFD2	765 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	OR11H4	Q8NGC9	324 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	GATAD2B	Q8WXI9	593 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	MS4A6E	Q96DS6	147 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	LCOR	Q96JN0	433 aa	Predicted RBP	4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	KCTD7	Q96MP8	289 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	FRMD6	Q96NE9	622 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	GFI1	Q99684	422 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	LGR4	Q9BXB1	951 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	ENKD1	Q9H0I2	346 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	ISG20L2	Q9H9L3	353 aa	Known RBP	4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	IL21R	Q9HBE5	538 aa		4.13	□□□□□ -1.75
CTSC-208	ENST00000533897	SPG21	Q9NZD8	308 aa		4.13	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms