RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TMBIM1Q969X1 311 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 LRRC46Q96FV0 321 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ZFP3Q96NJ6 502 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 COL21A1Q96P44 957 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TMEM237Q96Q45 408 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ALPK1Q96QP1 1244 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TUBA1CQ9BQE3 449 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 FAIM2Q9BWQ8 316 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PLEKHF2Q9H8W4 249 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ANKRA2Q9H9E1 313 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 SERHLQ9NQF3 203 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CLCF1Q9UBD9 225 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 UTS2RQ9UKP6 389 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 DLGAP4Q9Y2H0 992 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ZNF780BQ9Y6R6 833 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TUBAL3A6NHL2 446 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ULK1O75385 1050 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 NME6O75414 186 aaPredicted RBP11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GOSR1O95249 250 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 KRT6AP02538 564 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 KRT6BP04259 564 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 IL3P08700 152 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TACR1P25103 407 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 SRD5A2P31213 254 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 KRT6CP48668 564 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PCYT1AP49585 367 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 HTR6P50406 440 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 AGFG1P52594 562 aaKnown RBP11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PNLIPRP2P54317 469 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CLDN18P56856 261 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CORO7P57737 925 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 B3GALT5-AS1P59052 145 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 C16orf78Q8WTQ4 265 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 MZB1Q8WU39 189 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 IFT81Q8WYA0 676 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 WNT2BQ93097 391 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 MTBPQ96DY7 904 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 L3HYPDHQ96EM0 354 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 APIPQ96GX9 242 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 POM121Q96HA1 1249 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 SFXN3Q9BWM7 321 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 SLC35C2Q9NQQ7 365 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TAS2R7Q9NYW3 318 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 EHD3Q9NZN3 535 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 FBXL2Q9UKC9 423 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 MAPRE3Q9UPY8 281 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PLEKHA6Q9Y2H5 1048 aa11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 RPH3AQ9Y2J0 694 aaPredicted RBP11.12□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 A0A1W2PPR1 153 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 MYO1GB0I1T2 1018 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 HCRTR2O43614 444 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TNFSF13O75888 250 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 SUPT7LO94864 414 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ATE1O95260 518 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TMIGD3P0DMS9 266 aaPredicted RBP11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CYP4B1P13584 511 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ZNF708P17019 499 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 KLK2P20151 261 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CHMP24386 653 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ATP5F1P24539 256 aaPredicted RBP11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ALDH9A1P49189 494 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PSPHP78330 225 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PSG6Q00889 435 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 RCAN2Q14206 197 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TOMM20Q15388 145 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 BCL2A1Q16548 175 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 SPIN4Q56A73 249 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PAMR1Q6UXH9 720 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 SH2D5Q6ZV89 423 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GPRIN3Q6ZVF9 776 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CAMKMTQ7Z624 323 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 SAMD14Q8IZD0 417 aaPredicted RBP11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CEP112Q8N8E3 955 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CHDHQ8NE62 594 aaPredicted RBP11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 OR7G2Q8NG99 324 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 OR9A2Q8NGT5 310 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 UHMK1Q8TAS1 419 aaKnown RBP11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 LINC01560Q8TB33 94 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 METTL6Q8TCB7 284 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 KAT2AQ92830 837 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TMCO6Q96DC7 493 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 RMND5BQ96G75 393 aaPredicted RBP11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ADOQ96SZ5 270 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TM9SF2Q99805 663 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TXLNGYQ9BZA5 131 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 SHCBP1LQ9BZQ2 653 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 KLRF1Q9NZS2 232 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 WIF1Q9Y5W5 379 aa11.11□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ROS1P08922 2347 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 A0A087WV62 115 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 EXOC1LA0A1B0GW35 172 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CLCA1A8K7I4 914 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 A8MXE2 369 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PLOD2O00469 737 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 UBFD1O14562 309 aaKnown RBP11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PCDH7O60245 1069 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 FADS1O60427 444 aa11.1□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ERN1O75460 977 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms