RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CPNE6O95741 557 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 SERPINA3P01011 423 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 EDNRAP25101 427 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 B4GALNT1Q00973 533 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 MEDAGQ5VYS4 303 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ABHD17CQ6PCB6 329 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 RETREG3Q86VR2 466 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 UBQLNLQ8IYU4 475 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 LINC00615Q96LM1 132 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ZNF717Q9BY31 904 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 WSB2Q9NYS7 404 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ANXA2P2A6NMY6 339 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 NPIPA2E9PIF3 369 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 NPIPA3F8WFD2 350 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ANXA2P07355 339 aaKnown RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 FUT4P22083 530 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 SLC6A12P48065 614 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ELOAQ14241 798 aaKnown RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 UGT8Q16880 541 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 CCNJQ5T5M9 372 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 NRMQ8IXM6 262 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 CHTF18Q8WVB6 975 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 PIK3R3Q92569 461 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 TMEM203Q969S6 136 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 TM4SF18Q96CE8 201 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 TMEM80Q96HE8 168 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 DIRAS2Q96HU8 199 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 RIMS3Q9UJD0 308 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ICKQ9UPZ9 632 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ASB1Q9Y576 335 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 SBF1O95248 1867 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 TSPAN11A1L157 253 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 MOSPD3O75425 235 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 C7P10643 843 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ELK4P28324 431 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 CLRN1P58418 232 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 SELPLGQ14242 412 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 RGS21Q2M5E4 152 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 SPATC1Q76KD6 591 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 SFTPA1Q8IWL2 248 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 LNX2Q8N448 690 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 SLC5A8Q8N695 610 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 HORMAD2Q8N7B1 307 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 CNIH3Q8TBE1 160 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 FAM46AQ96IP4 442 aaKnown RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ADOQ96SZ5 270 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ARMC1Q9NVT9 282 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 EIF1AYO14602 144 aaKnown RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 PRKRAO75569 313 aaKnown RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 B3GALT4O96024 378 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 DCDP81605 110 aaKnown RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 RHAGQ02094 409 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 EEF1A2Q05639 463 aaKnown RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 IL18Q14116 193 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 SYPL1Q16563 259 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 SMRP1Q8NCR6 262 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 OR51G2Q8NGK0 314 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 CCDC74AQ96AQ1 378 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 COX4I2Q96KJ9 171 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ORAI3Q9BRQ5 295 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 TRIM36Q9NQ86 728 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 SNTG1Q9NSN8 517 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 COLQQ9Y215 455 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 SLC17A4Q9Y2C5 497 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 WDR37Q9Y2I8 494 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 TRBV11-1A0A0K0K1C0 115 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 CASC3O15234 703 aaKnown RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 CD160O95971 181 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 COL13A1Q5TAT6 717 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ADNP2Q6IQ32 1131 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 KLHL17Q6TDP4 642 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 TMEM92Q6UXU6 159 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 GID4Q8IVV7 300 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 MAELQ96JY0 434 aaKnown RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ZNF300Q96RE9 604 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ELF4Q99607 663 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 BTBD2Q9BX70 525 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 WDR12Q9GZL7 423 aaKnown RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 NT5DC2Q9H857 520 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 GORASP2Q9H8Y8 452 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 TIGARQ9NQ88 270 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ASB6Q9NWX5 421 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 NFKBIL1Q9UBC1 381 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-213ENST00000448038 ATG4BQ9Y4P1 393 aa6.97□□□□□ -1.29
SYNE1-213ENST00000448038 TMEM265A0A087WTH1 108 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 CDC14CA4D256 554 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 LRIT2A6NDA9 550 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 TARM1B6A8C7 271 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 PLPP1O14494 284 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 XPNPEP2O43895 674 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 ADAP00813 363 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 GKN3PP0CG01 181 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 BMP2P12643 396 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 MAP3K8P41279 467 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 SLC3A1Q07837 685 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 MADCAM1Q13477 382 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 DSG2Q14126 1118 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 NADK2Q4G0N4 442 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 FAM111BQ6SJ93 734 aa6.96□□□□□ -1.29
SYNE1-213ENST00000448038 KRT74Q7RTS7 529 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms