RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 RPS26P11Q5JNZ5 115 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 C6orf183Q5T699 404 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 RETREG3Q86VR2 466 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 AMER3Q8N944 861 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 ZNF775Q96BV0 537 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 CCNL2Q96S94 520 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 NTMT1Q9BV86 223 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 SPATA5L1Q9BVQ7 753 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 PRO3102Q9H379 93 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 SLAMF7Q9NQ25 335 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 LYARQ9NX58 379 aaKnown RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 SATB2Q9UPW6 733 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 PTPN13Q12923 2485 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 COL6A3P12111 3177 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 A0A1W2PP18 115 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 SEC14L2O76054 403 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 NADKO95544 446 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 JUNBP17275 347 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 ACADLP28330 430 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 CRISP3P54108 245 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 TOP3AQ13472 1001 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 PAGE3Q5JUK9 113 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 TMEM214Q6NUQ4 689 aaKnown RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 ZNF730Q6ZMV8 503 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 C16orf47Q6ZP98 133 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 LARP4Q71RC2 724 aaKnown RBP eCLIP9.68□□□□□ -0.86
COL6A3-205ENST00000392004 TMPRSS9Q7Z410 1059 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 ZDHHC13Q8IUH4 622 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 ARMC8Q8IUR7 673 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 HMGCLL1Q8TB92 370 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 C16orf58Q96GQ5 468 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 CMTM6Q9NX76 183 aa9.68□□□□□ -0.86
COL6A3-205ENST00000392004 CHD9Q3L8U1 2897 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 DLGAP1O14490 977 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 PLGP00747 810 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-205ENST00000392004 CAPN3P20807 821 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 OXA1LQ15070 435 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 KANK2Q63ZY3 851 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 PWWP2BQ6NUJ5 590 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 SLC7A5P1Q8MH63 180 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 PARP8Q8N3A8 854 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 LNX2Q8N448 690 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 OR52R1Q8NGF1 315 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.67□□□□□ -0.86
COL6A3-205ENST00000392004 BAHD1Q8TBE0 780 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-205ENST00000392004 TANKQ92844 425 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 TP53INP1Q96A56 240 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 OR2A14Q96R47 310 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 UGT2B28Q9BY64 529 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 OR51I1Q9H343 314 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 TUBB1Q9H4B7 451 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 ZNF71Q9NQZ8 489 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-205ENST00000392004 C2orf92A0A1B0GVN3 265 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 A8MVJ9 347 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 CXCR6O00574 342 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 TNFSF14O43557 240 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 TMPRSS11DO60235 418 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 ACPPP15309 386 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 GPX3P22352 226 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 DNASE1L3Q13609 305 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 SPATS1Q496A3 300 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 ABHD17CQ6PCB6 329 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 PROSER1Q86XN7 944 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 TADA1Q96BN2 335 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 SERINC2Q96SA4 455 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 TMEM27Q9HBJ8 222 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 ZNF160Q9HCG1 818 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 AIG1Q9NVV5 245 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 HPF1Q9NWY4 346 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 KLHL42Q9P2K6 505 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 ABCA4P78363 2273 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 LRIT2A6NDA9 550 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 CPSF4LA6NMK7 179 aaKnown RBP9.67□□□□□ -0.86
COL6A3-205ENST00000392004 MCIDASD6RGH6 385 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 MASP2O00187 686 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 PRKD3O94806 890 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 ALPPP05187 535 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 FTH1P19P0C7X4 201 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 GSTM2P28161 218 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 IL5RAQ01344 420 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 DAG1Q14118 895 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 KCNJ8Q15842 424 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 KLHL12Q53G59 568 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 GPAT4Q86UL3 456 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 MEX3DQ86XN8 651 aaKnown RBP9.67□□□□□ -0.86
COL6A3-205ENST00000392004 ANKRD13BQ86YJ7 626 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 ANKRD53Q8N9V6 530 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 CAPSLQ8WWF8 208 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 ASB15Q8WXK1 588 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 DOHHQ9BU89 302 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 FUNDC2Q9BWH2 189 aa9.67□□□□□ -0.86
COL6A3-205ENST00000392004 IGLV3-16A0A075B6K0 115 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 TRIM64A6NGJ6 449 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 PRR33A8MZF0 331 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 BCAS1O75363 584 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 HBQ1P09105 142 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 ALDOCP09972 364 aaKnown RBP9.66□□□□□ -0.86
COL6A3-205ENST00000392004 NAT1P18440 290 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 SFTPDP35247 375 aa9.66□□□□□ -0.86
COL6A3-205ENST00000392004 PSMD4P55036 377 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms