RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 HMX3A6NHT5 357 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 GLOD5A6NK44 160 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 MID1O15344 667 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 AGR2O95994 175 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 CCNYL3P0C7X3 344 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 CMPK1P30085 196 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 SDC2P34741 201 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 OMPP47874 163 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 RPS25P62851 125 aaKnown RBP13.41□□□□□ -0.26
CD48-201ENST00000368045 PPP3R1P63098 170 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 ACSM1Q08AH1 577 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 DSG2Q14126 1118 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 CST6Q15828 149 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 ZMAT1Q5H9K5 638 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 ATAD3CQ5T2N8 411 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 PDZK1Q5T2W1 519 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 TMEM107Q6UX40 140 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 WASH2PQ6VEQ5 465 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 ZNF485Q8NCK3 441 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 NUP43Q8NFH3 380 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 OR8D4Q8NGM9 314 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 ACOT11Q8WXI4 607 aaPredicted RBP13.41□□□□□ -0.26
CD48-201ENST00000368045 TM9SF4Q92544 642 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 ELP4Q96EB1 424 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 C1GALT1C1Q96EU7 318 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 OTUB1Q96FW1 271 aaPredicted RBP13.41□□□□□ -0.26
CD48-201ENST00000368045 JAM3Q9BX67 310 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 ACTRT3Q9BYD9 372 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 BTBD1Q9H0C5 482 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 RSPH9Q9H1X1 276 aaPredicted RBP13.41□□□□□ -0.26
CD48-201ENST00000368045 TPK1Q9H3S4 243 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 EGLN3Q9H6Z9 239 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 TRPV4Q9HBA0 871 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 CXXC1Q9P0U4 656 aaPredicted RBP13.41□□□□□ -0.26
CD48-201ENST00000368045 OR1A2Q9Y585 309 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 HEBP2Q9Y5Z4 205 aa13.41□□□□□ -0.26
CD48-201ENST00000368045 FAM172BPA6NC97 362 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 DUXAA6NLW8 204 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 C4orf51C9J302 202 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 POLR1CO15160 346 aaPredicted RBP13.4□□□□□ -0.26
CD48-201ENST00000368045 PROM1O43490 865 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 CHST10O43529 356 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 IDH3BO43837 385 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 PRKRAO75569 313 aaKnown RBP13.4□□□□□ -0.26
CD48-201ENST00000368045 OR5F1O95221 314 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 LIMS3P0CW19 117 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 LIMS4P0CW20 117 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 C5AR1P21730 350 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 GALP22466 123 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 NR4A2P43354 598 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 MXD1Q05195 221 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 CRTC2Q53ET0 693 aaPredicted RBP13.4□□□□□ -0.26
CD48-201ENST00000368045 ZNF628Q5EBL2 1059 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 AADACL4Q5VUY2 407 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 METAP1DQ6UB28 335 aaPredicted RBP13.4□□□□□ -0.26
CD48-201ENST00000368045 OLIG3Q7RTU3 272 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 PRICKLE2Q7Z3G6 844 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 NRROSQ86YC3 692 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 SAMD14Q8IZD0 417 aaPredicted RBP13.4□□□□□ -0.26
CD48-201ENST00000368045 OR2L3Q8NG85 312 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 OR52E1Q8NGJ3 308 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 PHOSPHO2Q8TCD6 241 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 CAPSLQ8WWF8 208 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 SLC9A6Q92581 669 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 CHFRQ96EP1 664 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 C16orf58Q96GQ5 468 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 DIRAS2Q96HU8 199 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 NEDD4LQ96PU5 975 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 KATNB1Q9BVA0 655 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 TIGARQ9NQ88 270 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 NTMQ9P121 344 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 EXOGQ9Y2C4 368 aaKnown RBP13.4□□□□□ -0.26
CD48-201ENST00000368045 CARD8Q9Y2G2 431 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 ZNF780BQ9Y6R6 833 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 LINC01553A4QN01 128 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 CCDC182A6NF36 153 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 WASHC1A8K0Z3 465 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 AP3D1O14617 1153 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 TMCC2O75069 709 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 HMGN1P05114 100 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 CLEC2LP0C7M8 214 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 CFL1P23528 166 aaKnown RBP13.4□□□□□ -0.26
CD48-201ENST00000368045 SLC1A3P43003 542 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 CDH11P55287 796 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 LSM11P83369 360 aaKnown RBP eCLIP13.4□□□□□ -0.26
CD48-201ENST00000368045 IFITM2Q01629 132 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 CHRNEQ04844 493 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 DUSP2Q05923 314 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 UAP1L1Q3KQV9 507 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 OR2G6Q5TZ20 316 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 NXNL2Q5VZ03 156 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 C16orf62Q7Z3J2 963 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 RDH10Q8IZV5 341 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 VWA5B2Q8N398 1253 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 OR52N1Q8NH53 320 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 GATAD2BQ8WXI9 593 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 TMEM203Q969S6 136 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 ZNF681Q96N22 645 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 PHOX2BQ99453 314 aa13.4□□□□□ -0.26
CD48-201ENST00000368045 CACYBPQ9HB71 228 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms