RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 EMC8O43402 210 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 HCRTR2O43614 444 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 TLX2O43763 284 aaPredicted RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 DLX3O60479 287 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ICOSLGO75144 302 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 CRLF1O75462 422 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 SUPT3HO75486 399 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 SMNDC1O75940 238 aaKnown RBP eCLIP5.71□□□□□ -1.51e-5■■□□□ 11.9
CUX1-220ENST00000607092 SEC31AO94979 1220 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 CLDN9O95484 217 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 AIFM1O95831 613 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ATP1B1P05026 303 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 GFAPP14136 432 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ZNF708P17019 499 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 CSNK2A2P19784 350 aaPredicted RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 DRD5P21918 477 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 GPX3P22352 226 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 IVDP26440 423 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 BSGP35613 385 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 GMPRP36959 345 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 CLK3P49761 638 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 AGFG1P52594 562 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 HNRNPH2P55795 449 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 GFRA1P56159 465 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 DSCR4P56555 118 aaPredicted RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 TAGLNQ01995 201 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 MAP4K2Q12851 820 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 IFT88Q13099 833 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 GANABQ14697 944 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 SLMAPQ14BN4 828 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ZKSCAN8Q15776 578 aaPredicted RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 C18orf21Q32NC0 220 aaPredicted RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 FNDC7Q5VTL7 733 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 C18orf63Q68DL7 685 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ADNP2Q6IQ32 1131 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 SSX8Q7RTT4 187 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 BTLAQ7Z6A9 289 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 YRDCQ86U90 279 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 EXOC3L1Q86VI1 746 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 KRTAP1-3Q8IUG1 177 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 SPNS2Q8IVW8 549 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 TRIM42Q8IWZ5 723 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ZBED8Q8IZ13 594 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 TEX9Q8N6V9 391 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ZNF615Q8N8J6 731 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 CNEP1R1Q8N9A8 125 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ATP6V1E2Q96A05 226 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ADIPOR1Q96A54 375 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 PIK3IP1Q96FE7 263 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 PERPQ96FX8 193 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ZNF845Q96IR2 970 aaPredicted RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 COL21A1Q96P44 957 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 CDK15Q96Q40 435 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 MTERF1Q99551 399 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 MCMBPQ9BTE3 642 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 STMN4Q9H169 189 aaPredicted RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 NXF5Q9H1B4 397 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 OR10A4Q9H209 315 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ALG9Q9H6U8 611 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 PTGES2Q9H7Z7 377 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 UBTD1Q9HAC8 227 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 PLAC1Q9HBJ0 212 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 NGBQ9NPG2 151 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 SERHLQ9NQF3 203 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 CLCF1Q9UBD9 225 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 RNF14Q9UBS8 474 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 TRPS1Q9UHF7 1281 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 BCAP29Q9UHQ4 241 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 DCTN4Q9UJW0 460 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 DKKL1Q9UK85 242 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 MRTO4Q9UKD2 239 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 SNX12Q9UMY4 172 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 MTO1Q9Y2Z2 717 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 ACOT9Q9Y305 439 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 EMC9Q9Y3B6 208 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ZNF175Q9Y473 711 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 ZNF780BQ9Y6R6 833 aa5.71□□□□□ -1.5
CUX1-220ENST00000607092 FBN1P35555 2871 aaKnown RBP5.71□□□□□ -1.5
CUX1-220ENST00000607092 A0A087X1B8 175 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 A0A1W2PR48 441 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 GLOD5A6NK44 160 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 EFCAB8A8MWE9 144 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 INAFM1C9JVW0 142 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 SMAD7O15105 426 aaKnown RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 PHGDHO43175 533 aaKnown RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 PRAMEF4O60810 478 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 SH3BGRLO75368 114 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 TNFRSF21O75509 655 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 BANF1O75531 89 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 TNFSF13O75888 250 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 SLITRK5O94991 958 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 LRATO95237 230 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 WISP3O95389 354 aaPredicted RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 CNOT4O95628 575 aaKnown RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 LTA4HP09960 611 aaKnown RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 PABPC4LP0CB38 370 aaKnown RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 EPORP19235 508 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 TBXA2RP21731 343 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 DPP4P27487 766 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms