RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TMEM9Q9P0T7 183 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 NTMQ9P121 344 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 PSORS1C1Q9UIG5 152 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 NTNG1Q9Y2I2 539 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 ZNF217O75362 1048 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 UGT2B17O75795 530 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 ADRA2AP08913 450 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 PORP16435 677 aaPredicted RBP13.54□□□□□ -0.24
VRK3-217ENST00000599538 CCNA2P20248 432 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 TLX1P31314 330 aaPredicted RBP13.54□□□□□ -0.24
VRK3-217ENST00000599538 ANXA11P50995 505 aaKnown RBP13.54□□□□□ -0.24
VRK3-217ENST00000599538 BLKP51451 505 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 RELAQ04206 551 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 BNIP3Q12983 259 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 SPCS2Q15005 226 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 PRSS48Q7RTY5 328 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 C16orf62Q7Z3J2 963 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 CA13Q8N1Q1 262 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 OR9A4Q8NGU2 314 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 ADAMTS15Q8TE58 950 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 RORBQ92753 470 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 MS4A4EQ96PG1 132 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 COPS4Q9BT78 406 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 LYRM4Q9HD34 91 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 C11orf16Q9NQ32 467 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 THADAQ6YHU6 1953 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 SLC9B1P1A6NJY1 282 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 METTL12A8MUP2 240 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 FAAHO00519 579 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 ASNA1O43681 348 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 BCAS1O75363 584 aaPredicted RBP13.54□□□□□ -0.24
VRK3-217ENST00000599538 RDH16O75452 317 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 ADAP00813 363 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 CSF2P04141 144 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 TP53P04637 393 aaPredicted RBP13.54□□□□□ -0.24
VRK3-217ENST00000599538 CT62P0C5K7 136 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 ACP2P11117 423 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 CDH3P22223 829 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 PSMB9P28065 219 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 MAGEA8P43361 318 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 TARDBPQ13148 414 aaKnown RBP eCLIP13.54□□□□□ -0.242e-6■■■■□ 23
VRK3-217ENST00000599538 CTF1Q16619 201 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 ZNF628Q5EBL2 1059 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 FHL5Q5TD97 284 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 HEPHL1Q6MZM0 1159 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 CDC73Q6P1J9 531 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 FRRS1Q6ZNA5 592 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 DGAT2L6Q6ZPD8 337 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 ZER1Q7Z7L7 766 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 ARL14Q8N4G2 192 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 ARHGEF39Q8N4T4 335 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 LMX1AQ8TE12 382 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 RAB2BQ8WUD1 216 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 GAB3Q8WWW8 586 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 TRNT1Q96Q11 434 aaKnown RBP13.54□□□□□ -0.24
VRK3-217ENST00000599538 CCDC3Q9BQI4 270 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 FNDC11Q9BVV2 318 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 PINK1Q9BXM7 581 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 RBCK1Q9BYM8 510 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 UCK2Q9BZX2 261 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 MIR1-1HGQ9H1L0 117 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 SEMA6CQ9H3T2 930 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 ADAP2Q9NPF8 381 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 IMPAD1Q9NX62 359 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 MS4A12Q9NXJ0 267 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 ENPP5Q9UJA9 477 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 SLC9A8Q9Y2E8 581 aa13.54□□□□□ -0.24
VRK3-217ENST00000599538 A0A1W2PRQ8 180 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 ALPPP05187 535 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 MMP11P24347 488 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 CD38P28907 300 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 TRHRP34981 398 aaPredicted RBP13.53□□□□□ -0.24
VRK3-217ENST00000599538 MLLT10P55197 1068 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 OCA2Q04671 838 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 FAM214AQ32MH5 1076 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 SYT6Q5T7P8 510 aaPredicted RBP13.53□□□□□ -0.24
VRK3-217ENST00000599538 IL4I1Q96RQ9 567 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 MAP3K3Q99759 626 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 SPATA5L1Q9BVQ7 753 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 PLCXD1Q9NUJ7 323 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 FKBP14Q9NWM8 211 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 FBXO34Q9NWN3 711 aa13.53□□□□□ -0.24
VRK3-217ENST00000599538 CLCA1A8K7I4 914 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 NOL3O60936 208 aaKnown RBP13.52□□□□□ -0.24
VRK3-217ENST00000599538 SDC3O75056 442 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 UBXN7O94888 489 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 STSP08842 583 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 OSMP13725 252 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 ZNF10P21506 573 aaPredicted RBP13.52□□□□□ -0.24
VRK3-217ENST00000599538 CD27P26842 260 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 ALDH4A1P30038 563 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 RNF144AP50876 292 aaPredicted RBP13.52□□□□□ -0.24
VRK3-217ENST00000599538 LSM3P62310 102 aaKnown RBP13.52□□□□□ -0.24
VRK3-217ENST00000599538 GNA13Q14344 377 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 EXOSC7Q15024 291 aaKnown RBP13.52□□□□□ -0.24
VRK3-217ENST00000599538 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.52□□□□□ -0.24
VRK3-217ENST00000599538 PTCRAQ6ISU1 281 aaPredicted RBP13.52□□□□□ -0.24
VRK3-217ENST00000599538 ARMC6Q6NXE6 501 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 FAM92BQ6ZTR7 304 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 IQCHQ86VS3 1027 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms