RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 PTGER1P34995 402 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 GPC1P35052 558 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 SOX18P35713 384 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 HPCAL1P37235 193 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 PIGAP37287 484 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 FBXW4P57775 412 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 MRPS22P82650 360 aaKnown RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 PLCXD2Q0VAA5 305 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 FOXO1Q12778 655 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 DUSP8Q13202 625 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 SLC10A1Q14973 349 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 SMU1Q2TAY7 513 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 C6orf136Q5SQH8 315 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 PRAMEF20Q5VT98 475 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 PACS2Q86VP3 889 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 TRIM42Q8IWZ5 723 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 SLC34A3Q8N130 599 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 NATD1Q8N6N6 113 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 ANKRD42Q8N9B4 389 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 FNDC5Q8NAU1 212 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 OR52N2Q8NGI0 321 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 SPPL2AQ8TCT8 520 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 GFM2Q969S9 779 aaKnown RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 OMA1Q96E52 524 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 ZBED6CLQ96FA7 236 aaPredicted RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 ZNF597Q96LX8 424 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 AMDHD1Q96NU7 426 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 BTBD9Q96Q07 612 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 PRPF18Q99633 342 aaKnown RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 DEFB127Q9H1M4 99 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 GLIPR2Q9H4G4 154 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 TMBIM4Q9HC24 238 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 PLSCR2Q9NRY7 297 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 DDX18Q9NVP1 670 aaKnown RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 ARGLU1Q9NWB6 273 aaPredicted RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 TUBA8Q9NY65 449 aaPredicted RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 NKIRAS1Q9NYS0 192 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 MAPRE3Q9UPY8 281 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 EXO1Q9UQ84 846 aaKnown RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 EIF3LQ9Y262 564 aaKnown RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 DTX4Q9Y2E6 619 aa12.31□□□□□ -0.44
CLK3-216ENST00000564468 GPR55Q9Y2T6 319 aaPredicted RBP12.31□□□□□ -0.44
CLK3-216ENST00000564468 A0A0G2JMM0 328 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 A0A1B0GTH9 108 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 ATP6AP2A0A1C7CYW4 349 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 A0A1W2PPB8 328 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 A0A1W2PRS3 328 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 TMEM120BA0PK00 339 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 KIR3DP1A8MWS1 328 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 AKAP10O43572 662 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 ITM2AO43736 263 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 ATP6AP2O75787 350 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 WISP2O76076 250 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 ABCB1P08183 1280 aaPredicted RBP12.3□□□□□ -0.44
CLK3-216ENST00000564468 ELAVL4P26378 380 aaKnown RBP12.3□□□□□ -0.44
CLK3-216ENST00000564468 ARRB2P32121 409 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 DCTP40126 519 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 RPL14P50914 215 aaKnown RBP12.3□□□□□ -0.44
CLK3-216ENST00000564468 MANFP55145 182 aaKnown RBP12.3□□□□□ -0.44
CLK3-216ENST00000564468 MAGOHP61326 146 aaKnown RBP12.3□□□□□ -0.44
CLK3-216ENST00000564468 SNTA1Q13424 505 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 PDE7AQ13946 482 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 EFR3AQ14156 821 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 MPP2Q14168 576 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 CASP8Q14790 479 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 ZNHIT3Q15649 155 aaPredicted RBP12.3□□□□□ -0.44
CLK3-216ENST00000564468 NNATQ16517 81 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 C3AR1Q16581 482 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 ZNF787Q6DD87 383 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 TMEM81Q6P7N7 255 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 TMEM107Q6UX40 140 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 RPTNQ6XPR3 784 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 TMEM64Q6YI46 380 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 PRR22Q8IZ63 422 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 TMEM251Q8N6I4 163 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 OR7G2Q8NG99 324 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 CEP70Q8NHQ1 597 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 FAM57AQ8TBR7 257 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 TMCO6Q96DC7 493 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 ELP4Q96EB1 424 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 DTNBP1Q96EV8 351 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 VSTM2LQ96N03 204 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 ANGPTL4Q9BY76 406 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 LDAHQ9H6V9 325 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 METTL7AQ9H8H3 244 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 FOLH1BQ9HBA9 442 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 ACSS1Q9NUB1 689 aaPredicted RBP12.3□□□□□ -0.44
CLK3-216ENST00000564468 ATAD3AQ9NVI7 634 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 BAIAP2L1Q9UHR4 511 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 SH3BGRL2Q9UJC5 107 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 MRTO4Q9UKD2 239 aaKnown RBP12.3□□□□□ -0.44
CLK3-216ENST00000564468 C19orf53Q9UNZ5 99 aaPredicted RBP12.3□□□□□ -0.44
CLK3-216ENST00000564468 ARHGAP21Q5T5U3 1957 aa12.3□□□□□ -0.44
CLK3-216ENST00000564468 CACNA1CQ13936 2221 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 OR14I1A6ND48 311 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 OR6C70A6NIJ9 312 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 SUSD5O60279 629 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 HCN1O60741 890 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 REM1O75628 298 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 PDE9AO76083 593 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms