RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 KLF18A0A0U1RQI7 1052 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 LOC101059948A0A1B0GTJ6 334 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 C5orf51A6NDU8 294 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 FAM90A10PA6NDY2 464 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 BECN2A8MW95 431 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 KPNA7A9QM74 516 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 F8VP50 259 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 F8VVB4 439 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 F8VWA3 439 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 PLOD2O00469 737 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 CLDN5O00501 218 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 ARPC2O15144 300 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 SLC16A4O15374 487 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 SLC31A1O15431 190 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 ZNHIT1O43257 154 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 KCNAB3O43448 404 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 PRAF2O60831 178 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 SMPD2O60906 423 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 CNOT3O75175 753 aaKnown RBP3.45□□□□□ -1.86
LIMA1-208ENST00000551691 PEX11AO75192 247 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 TGFAP01135 160 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 LIPFP07098 398 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 ANKRD34CP0C6C1 535 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 KRT5P13647 590 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 UGT1A6P19224 532 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 F8A1P23610 371 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 UGT1A3P35503 534 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 CETN2P41208 172 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 MAGEB1P43366 347 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 CDX1P47902 265 aaPredicted RBP3.45□□□□□ -1.86
LIMA1-208ENST00000551691 FMO5P49326 533 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 ZNF132P52740 706 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 ART1P52961 327 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 KCNK10P57789 538 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 SRP54P61011 504 aaKnown RBP3.45□□□□□ -1.86
LIMA1-208ENST00000551691 MYL7Q01449 175 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 SMARCB1Q12824 385 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 TRAF2Q12933 501 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 ABRQ12979 859 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 PRKAA1Q13131 559 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 TRA2AQ13595 282 aaKnown RBP eCLIP3.45□□□□□ -1.86
LIMA1-208ENST00000551691 DHX34Q14147 1143 aaKnown RBP3.45□□□□□ -1.86
LIMA1-208ENST00000551691 RABEP1Q15276 862 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 KRT31Q15323 416 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 RBMS2Q15434 407 aaKnown RBP3.45□□□□□ -1.86
LIMA1-208ENST00000551691 ASPHD1Q5U4P2 390 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 OR6B2Q6IFH4 312 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 OR7E24Q6IFN5 339 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 TRNP1Q6NT89 227 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 IRGCQ6NXR0 463 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 FAM171BQ6P995 826 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 AFTPHQ6ULP2 937 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 LINGO4Q6UY18 593 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 B3GLCTQ6Y288 498 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 COLCA1Q6ZS62 124 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 PIM3Q86V86 326 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 PTOV1Q86YD1 416 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 GPALPP1Q8IXQ4 340 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 SLC22A18ASQ8N1D0 253 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 CLEC1AQ8NC01 280 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 OR2T34Q8NGX1 318 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 NRGNQ92686 78 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 THRSPQ92748 146 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 MYLPFQ96A32 169 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 ULK4Q96C45 1275 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 OTUB2Q96DC9 234 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 TMEM19Q96HH6 336 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 IFT74Q96LB3 600 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 TSGA13Q96PP4 275 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 OMDQ99983 421 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 DDX50Q9BQ39 737 aaKnown RBP3.45□□□□□ -1.86
LIMA1-208ENST00000551691 ACBD6Q9BR61 282 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 SLC25A33Q9BSK2 321 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 CALN1Q9BXU9 219 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 TCEAL2Q9H3H9 227 aaPredicted RBP3.45□□□□□ -1.86
LIMA1-208ENST00000551691 DNAJC4Q9NNZ3 241 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 NGBQ9NPG2 151 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 POT1Q9NUX5 634 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.45□□□□□ -1.86
LIMA1-208ENST00000551691 RBM28Q9NW13 759 aaKnown RBP3.45□□□□□ -1.86
LIMA1-208ENST00000551691 CGNQ9P2M7 1197 aaKnown RBP3.45□□□□□ -1.86
LIMA1-208ENST00000551691 KCNN3Q9UGI6 736 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 TBK1Q9UHD2 729 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 SIX4Q9UIU6 781 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 RABL2BQ9UNT1 228 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 KCNK6Q9Y257 313 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 PTGDR2Q9Y5Y4 395 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 UNC13CQ8NB66 2214 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 MDC1Q14676 2089 aaKnown RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 SYNJ2BP-COX16A0A087WUM0 186 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 C2orf92A0A1B0GVN3 265 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 TRIM64CA6NLI5 447 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 GAPDHSO14556 408 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 CLDN3O15551 220 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 OR10H2O60403 315 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 JAK2O60674 1132 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 SOCS5O75159 536 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 SCGB2A1O75556 95 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 SORBS2O94875 1100 aaKnown RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 SOX30O94993 753 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms