RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 FAM114A2Q9NRY5 505 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 GPR83Q9NYM4 423 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 RCOR3Q9P2K3 495 aaPredicted RBP3.32□□□□□ -1.88
VPS29-205ENST00000548539 ATXN10Q9UBB4 475 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 SPATA2Q9UM82 520 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 FOXJ3Q9UPW0 622 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 STYXL1Q9Y6J8 313 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 NCAPD2Q15021 1401 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 NOTCH2Q04721 2471 aa3.32□□□□□ -1.88
VPS29-205ENST00000548539 SYNJ2O15056 1496 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 A0A087WZY1 265 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 BCLAF3A2AJT9 711 aaKnown RBP3.31□□□□□ -1.88
VPS29-205ENST00000548539 IMPA2O14732 288 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 MCF2LO15068 1137 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 PI15O43692 258 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 PDE5AO76074 875 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 IGSF6O95976 241 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 PPP2R1BP30154 601 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 HMGCLP35914 325 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 BNIP1Q12981 228 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 PDZK1IP1Q13113 114 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 RAPSNQ13702 412 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 EXOSC2Q13868 293 aaKnown RBP3.31□□□□□ -1.88
VPS29-205ENST00000548539 CYLC2Q14093 348 aaPredicted RBP3.31□□□□□ -1.88
VPS29-205ENST00000548539 FCN2Q15485 313 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 USH1GQ495M9 461 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 LEMD1Q68G75 181 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 SULT1C3Q6IMI6 304 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 ARMCX5Q6P1M9 558 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 RFWD3Q6PCD5 774 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 ATRAIDQ6UW56 229 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 ZNF841Q6ZN19 808 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 PAQR9Q6ZVX9 377 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 TSEN54Q7Z6J9 526 aaKnown RBP3.31□□□□□ -1.88
VPS29-205ENST00000548539 ZNF440Q8IYI8 595 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 TEX9Q8N6V9 391 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 C4orf32Q8N8J7 132 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 SLC25A36Q96CQ1 311 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 THUMPD2Q9BTF0 503 aaKnown RBP3.31□□□□□ -1.88
VPS29-205ENST00000548539 WRAP53Q9BUR4 548 aaKnown RBP3.31□□□□□ -1.88
VPS29-205ENST00000548539 CARD6Q9BX69 1037 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 TSPY26PQ9H489 355 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 PURGQ9UJV8 347 aaKnown RBP3.31□□□□□ -1.88
VPS29-205ENST00000548539 RNF115Q9Y4L5 304 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 U3KQV3 271 aa3.31□□□□□ -1.88
VPS29-205ENST00000548539 IGHV3-16A0A0C4DH30 117 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 TTC26A0AVF1 554 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 RNF222A6NCQ9 220 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 LRIT2A6NDA9 550 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 KRTAP16-1A8MUX0 517 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 E9PMD0 336 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.3□□□□□ -1.88
VPS29-205ENST00000548539 SGK494L7N484 410 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 LRRTM2O43300 516 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 NDUFA7O95182 113 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 MBD3O95983 291 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 ADRA1AP35348 466 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 DLSTP36957 453 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 MDH1P40925 334 aaKnown RBP3.3□□□□□ -1.88
VPS29-205ENST00000548539 PTGFRP43088 359 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 POU3F4P49335 361 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 MFAP2P55001 183 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 NUCB2P80303 420 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 MRPS6P82932 125 aaKnown RBP3.3□□□□□ -1.88
VPS29-205ENST00000548539 ZNF85Q03923 595 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 TRIP10Q15642 601 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 CD226Q15762 336 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 PCK2Q16822 640 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 SNAI3Q3KNW1 292 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 GLIPR1L2Q4G1C9 344 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 C14orf28Q4W4Y0 310 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 TAF3Q5VWG9 929 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 REP15Q6BDI9 236 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 DMKNQ6E0U4 476 aaPredicted RBP3.3□□□□□ -1.88
VPS29-205ENST00000548539 GALNT17Q6IS24 598 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 FAAP20Q6NZ36 180 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 SLC39A4Q6P5W5 647 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 ABRAXAS1Q6UWZ7 409 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 ZNF562Q6V9R5 426 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 STXBP4Q6ZWJ1 553 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 Q7L0L9 218 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 LPCAT2Q7L5N7 544 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 SLC47A2Q86VL8 602 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 ZNF671Q8TAW3 534 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 GIPC3Q8TF64 312 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 DLX4Q92988 240 aaPredicted RBP3.3□□□□□ -1.88
VPS29-205ENST00000548539 SYAP1Q96A49 352 aaPredicted RBP3.3□□□□□ -1.88
VPS29-205ENST00000548539 ANKRD9Q96BM1 317 aaPredicted RBP3.3□□□□□ -1.88
VPS29-205ENST00000548539 TSGA13Q96PP4 275 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 SOSTQ9BQB4 213 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 FAM173AQ9BQD7 235 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 ZNF416Q9BWM5 594 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 RPAP3Q9H6T3 665 aaPredicted RBP3.3□□□□□ -1.88
VPS29-205ENST00000548539 PANK3Q9H999 370 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 PALMDQ9NP74 551 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 TRPV5Q9NQA5 729 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 SLC35D1Q9NTN3 355 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 DCAF13Q9NV06 445 aaKnown RBP3.3□□□□□ -1.88
VPS29-205ENST00000548539 C1orf123Q9NWV4 160 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 CGNQ9P2M7 1197 aaKnown RBP3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms