RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CTXN1P60606 82 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 AIMP2Q13155 320 aaKnown RBP16.32■□□□□ 0.2
PTPRF-209ENST00000438120 ZNF423Q2M1K9 1284 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 MANEALQ5VSG8 457 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 UBE2UQ5VVX9 321 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 ARHGAP11AQ6P4F7 1023 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 PHC2Q8IXK0 858 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 ZNF709Q8N972 641 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 OR9Q2Q8NGE9 314 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 ASB15Q8WXK1 588 aa16.32■□□□□ 0.2
PTPRF-209ENST00000438120 SLC22A31A6NKX4 558 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 PCDH17O14917 1159 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 HNRNPA2B1P22626 353 aaKnown RBP16.31■□□□□ 0.2
PTPRF-209ENST00000438120 AFF1P51825 1210 aaKnown RBP16.31■□□□□ 0.2
PTPRF-209ENST00000438120 MORN1Q5T089 497 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 C3orf58Q8NDZ4 430 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 LGALS12Q96DT0 336 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 SPEF1Q9Y4P9 236 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 A6NL46 340 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 GJB3O75712 270 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 MC3RP41968 323 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 Q6ZSR6 202 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 MRPL10Q7Z7H8 261 aaKnown RBP16.31■□□□□ 0.2
PTPRF-209ENST00000438120 OR4K5Q8NGD3 323 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 PELOQ9BRX2 385 aaKnown RBP16.31■□□□□ 0.2
PTPRF-209ENST00000438120 ALOXE3Q9BYJ1 711 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 DPH1Q9BZG8 443 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 MKS1Q9NXB0 559 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 CNIH4Q9P003 139 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 FANCGO15287 622 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 RBMS1P29558 406 aaKnown RBP16.31■□□□□ 0.2
PTPRF-209ENST00000438120 ARL3P36405 182 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 GRHL2Q6ISB3 625 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 TMEM151BQ8IW70 566 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 TUBA1CQ9BQE3 449 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 CCDC86Q9H6F5 360 aaKnown RBP16.31■□□□□ 0.2
PTPRF-209ENST00000438120 KCNN3Q9UGI6 736 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 EBF1Q9UH73 591 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 NME4O00746 187 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 CD40LGP29965 261 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 TMBIM6P55061 237 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 GSTM4Q03013 218 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 THRSPQ92748 146 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 RHBDF1Q96CC6 855 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 PREBQ9HCU5 417 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 A0A0G2JPF8 293 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 HNRNPCL3B7ZW38 293 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 HNRNPCL4P0DMR1 293 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 STT3AP46977 705 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 DSC1Q08554 894 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 ACBD7Q8N6N7 88 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 ACTRT3Q9BYD9 372 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 SLC7A7Q9UM01 511 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 KCNIP3Q9Y2W7 256 aa16.31■□□□□ 0.2
PTPRF-209ENST00000438120 PHRF1Q9P1Y6 1649 aaKnown RBP16.31■□□□□ 0.2
PTPRF-209ENST00000438120 CNR2P34972 360 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 RCAN2Q14206 197 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 RGNQ15493 299 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 FAM205BPQ63HN1 556 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 LPAR4Q99677 370 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 ARMC1Q9NVT9 282 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 TMEM14AQ9Y6G1 99 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 M0R233 179 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 CAPN3P20807 821 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 DCKP27707 260 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 PIN1Q13526 163 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-209ENST00000438120 PAGE3Q5JUK9 113 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 WDR53Q7Z5U6 358 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-209ENST00000438120 OR5D16Q8NGK9 328 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 SAMD8Q96LT4 415 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 LMF1Q96S06 567 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 IVDP26440 423 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 SOX3P41225 446 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 CDKN2CP42773 168 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 ZNF45Q02386 682 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 MALLQ13021 153 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 NPRL2Q8WTW4 380 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 NECTIN4Q96NY8 510 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 APOOQ9BUR5 198 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 ICKQ9UPZ9 632 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 GGT3PA6NGU5 568 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 KIAA0355O15063 1070 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 FMO6PO60774 539 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 ZNF217O75362 1048 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 RBM39Q14498 530 aaKnown RBP16.3■□□□□ 0.2
PTPRF-209ENST00000438120 CYB561A3Q8NBI2 242 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 URM1Q9BTM9 101 aaKnown RBP16.3■□□□□ 0.2
PTPRF-209ENST00000438120 A0A0A6YYC8 382 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-209ENST00000438120 SH3PXD2BA1X283 911 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 I3L1I5 382 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-209ENST00000438120 RDH16O75452 317 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 GABBR2O75899 941 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 EDN1P05305 212 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 AKR1C4P17516 323 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 EIF2S3LQ2VIR3 472 aaKnown RBP16.3■□□□□ 0.2
PTPRF-209ENST00000438120 TBC1D15Q8TC07 691 aa16.3■□□□□ 0.2
PTPRF-209ENST00000438120 SPRYD4Q8WW59 207 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-209ENST00000438120 HOXB13Q92826 284 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-209ENST00000438120 TCEAL4Q96EI5 215 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms