RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 SLC15A1P46059 708 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 RAB38P57729 211 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 HNRNPKP61978 463 aaKnown RBP eCLIP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 DLX2Q07687 328 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 TSPAN31Q12999 210 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 SERTAD2Q14140 314 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 INAVAQ3KP66 663 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 GPAT3Q53EU6 434 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 PRRT3Q5FWE3 981 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 C12orf73Q69YU5 71 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 PLAG1Q6DJT9 500 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 MFSD12Q6NUT3 480 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 RASSF6Q6ZTQ3 369 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 USP43Q70EL4 1123 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 TAF8Q7Z7C8 310 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 MRGPREQ86SM8 312 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 C11orf74Q86VG3 221 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 GRAMD2AQ8IUY3 354 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 CDK20Q8IZL9 346 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 TSTD1Q8NFU3 115 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 GPR32P1Q8NGA4 272 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 ACOT11Q8WXI4 607 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 OR7D2Q96RA2 312 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 GAS2L1Q99501 681 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 CCDC3Q9BQI4 270 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 G6PC3Q9BUM1 346 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 SORBS1Q9BX66 1292 aaKnown RBP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 HOXD1Q9GZZ0 328 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 KLHL31Q9H511 634 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 SOX17Q9H6I2 414 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 IL21RQ9HBE5 538 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 HHATLQ9HCP6 504 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 FBXO8Q9NRD0 319 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 CHCHD3Q9NX63 227 aaKnown RBP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 SCHIP1Q9P0W5 487 aaPredicted RBP8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 WNT16Q9UBV4 365 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 FTSJ1Q9UET6 329 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 EBF1Q9UH73 591 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 FBXW2Q9UKT8 454 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 ACSL6Q9UKU0 697 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 A4GNTQ9UNA3 340 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 CDC14AQ9UNH5 594 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 BAIAP2Q9UQB8 552 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 CFL2Q9Y281 166 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 CSNK1G3Q9Y6M4 447 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 TICRRQ7Z2Z1 1910 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 MYO7AQ13402 2215 aa8.18□□□□□ -1.1
SNRNP40-202ENST00000373720 MYO10Q9HD67 2058 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 ARPC4-TTLL3A0A0A6YYG9 625 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CCDC163A0A0D9SF12 145 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 METTL12A8MUP2 240 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 C2CD4DB7Z1M9 353 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CLDN25C9JDP6 229 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 TLR4O00206 839 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 TAF4O00268 1085 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 RFXAPO00287 272 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 PCDH17O14917 1159 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 PGRMC2O15173 223 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 MBTPS2O43462 519 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 DYRK3O43781 588 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 MITFO75030 526 aaPredicted RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CYP7B1O75881 506 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 ATE1O95260 518 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 OPN1SWP03999 348 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 RPLP0P05388 317 aaKnown RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF888P0CJ79 500 aaPredicted RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CHRNB1P11230 501 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 NME1P15531 152 aaKnown RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 MAGP20916 626 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 FPR3P25089 353 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CERS1P27544 350 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CD38P28907 300 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 PCSK6P29122 969 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CD40LGP29965 261 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CSTF2P33240 577 aaKnown RBP eCLIP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 SOX6P35712 828 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 RBM34P42696 430 aaKnown RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 OR1E2P47887 323 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 GIPRP48546 466 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 IDH2P48735 452 aaKnown RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 GP2P55259 537 aaKnown RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 HSD17B7P56937 341 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CLDN2P57739 230 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 STARD6P59095 220 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 TAS2R41P59536 307 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CDK5Q00535 292 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 HHEXQ03014 270 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 RAB40BQ12829 278 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 EIF2B5Q13144 721 aaKnown RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 TARDBPQ13148 414 aaKnown RBP eCLIP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 IRF3Q14653 427 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 LASP1Q14847 261 aaKnown RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 MAPK11Q15759 364 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 SMAD2Q15796 467 aaKnown RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CTF1Q16619 201 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 PRSS53Q2L4Q9 553 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF628Q5EBL2 1059 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 FGD3Q5JSP0 725 aa8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.17□□□□□ -1.1
SNRNP40-202ENST00000373720 MFSD4BQ5TF39 518 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms