RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 VASNQ6EMK4 673 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 RNF165Q6ZSG1 346 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 ZER1Q7Z7L7 766 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 ARIH2OSQ8N7S6 290 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 BBS1Q8NFJ9 593 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 PTP4A1Q93096 173 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 HIST1H2AHQ96KK5 128 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 NPAS1Q99742 590 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 HIST1H2AJQ99878 128 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 ORAI3Q9BRQ5 295 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 H2AFJQ9BTM1 129 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 OSGEPL1Q9H4B0 414 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 ISG20L2Q9H9L3 353 aaKnown RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 C5AR2Q9P296 337 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 GPR160Q9UJ42 338 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 RASD1Q9Y272 281 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 PRG3Q9Y2Y8 225 aaPredicted RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 SIRT4Q9Y6E7 314 aaPredicted RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 CDH23Q9H251 3354 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 KDELR3O43731 214 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 F2P00734 622 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 OR56A5P0C7T3 313 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 TYMPP19971 482 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 TBXA2RP21731 343 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 LCN1P31025 176 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 SLC6A11P48066 632 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 BLVRAP53004 296 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 B4GALNT1Q00973 533 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 GPR17Q13304 367 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 PODNL1Q6PEZ8 512 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 IQCHQ86VS3 1027 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 OR7G3Q8NG95 312 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 OR52N2Q8NGI0 321 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 CNOT9Q92600 299 aaKnown RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 WBP2Q969T9 261 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 SECISBP2Q96T21 854 aaKnown RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 SEPT5Q99719 369 aaPredicted RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 DPAGT1Q9H3H5 408 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 PCDHB16Q9NRJ7 776 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 TNFRSF10DQ9UBN6 386 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 ZNF282Q9UDV7 671 aaPredicted RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 CD84Q9UIB8 345 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 BTNL2Q9UIR0 455 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 TDRD15B5MCY1 1934 aaKnown RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 TRPM7Q96QT4 1865 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 GLYATL1P3A0A0U1RQE8 302 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 STK25O00506 426 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 NMBP08949 121 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 PRPH2P23942 346 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 SLC6A12P48065 614 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 SPIN4Q56A73 249 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 NHLRC3Q5JS37 347 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 CD276Q5ZPR3 534 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 IFNL1Q8IU54 200 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 BOLLQ8N9W6 283 aaKnown RBP12.71□□□□□ -0.37
SKA3-201ENST00000298260 GPR26Q8NDV2 337 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 WDR48Q8TAF3 677 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 SMAP2Q8WU79 429 aaPredicted RBP12.71□□□□□ -0.37
SKA3-201ENST00000298260 SPRYD4Q8WW59 207 aaPredicted RBP12.71□□□□□ -0.37
SKA3-201ENST00000298260 FUBP3Q96I24 572 aaKnown RBP eCLIP12.71□□□□□ -0.37
SKA3-201ENST00000298260 ARHGAP9Q9BRR9 750 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 HTATIP2Q9BUP3 242 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 MAGEH1Q9H213 219 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 OR51B5Q9H339 312 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 CA10Q9NS85 328 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 LYARQ9NX58 379 aaKnown RBP12.71□□□□□ -0.37
SKA3-201ENST00000298260 ENOPH1Q9UHY7 261 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 ZNF175Q9Y473 711 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 MEIKINA0A087WXM9 373 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 ZC3H12DA2A288 527 aaKnown RBP12.71□□□□□ -0.37
SKA3-201ENST00000298260 GJB5O95377 273 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 TGFB1P01137 390 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 WNT1P04628 370 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 PSMA3P25788 255 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 CSKP41240 450 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 MTNR1AP48039 350 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 RHOAP61586 193 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 NAE1Q13564 534 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 SLC25A35Q3KQZ1 300 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 CERS6Q6ZMG9 384 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 OR4D9Q8NGE8 314 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 WDR20Q8TBZ3 569 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 OR4K3Q96R72 315 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 TINF2Q9BSI4 451 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 TMEM168Q9H0V1 697 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 RDH14Q9HBH5 336 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 ZNF304Q9HCX3 659 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 NANSQ9NR45 359 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 HPF1Q9NWY4 346 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 PTGFRNQ9P2B2 879 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 DNAH14Q0VDD8 3507 aa12.71□□□□□ -0.37
SKA3-201ENST00000298260 TRDV1A0A1B0GX56 115 aa12.7□□□□□ -0.38
SKA3-201ENST00000298260 ZNF593O00488 134 aaPredicted RBP12.7□□□□□ -0.38
SKA3-201ENST00000298260 PDCD5O14737 125 aa12.7□□□□□ -0.38
SKA3-201ENST00000298260 SMAD6O43541 496 aaKnown RBP12.7□□□□□ -0.38
SKA3-201ENST00000298260 H1F0P07305 194 aaKnown RBP12.7□□□□□ -0.38
SKA3-201ENST00000298260 FGF9P31371 208 aaPredicted RBP12.7□□□□□ -0.38
SKA3-201ENST00000298260 HNF1BP35680 557 aa12.7□□□□□ -0.38
SKA3-201ENST00000298260 FKBP1BP68106 108 aa12.7□□□□□ -0.38
SKA3-201ENST00000298260 ZNF155Q12901 538 aaPredicted RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms