RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 BRINP2Q9C0B6 783 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 ANKRA2Q9H9E1 313 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 COQ3Q9NZJ6 369 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 GRID1Q9ULK0 1009 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 GPR55Q9Y2T6 319 aaPredicted RBP13.62□□□□□ -0.23
CLN3-213ENST00000565047 PCDHGB3Q9Y5G1 929 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 NINQ8N4C6 2090 aa13.62□□□□□ -0.23
CLN3-213ENST00000565047 CAPN14A8MX76 684 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 NPIPB8E9PQR5 432 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 TP53I11O14683 189 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 HPNP05981 417 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 SNRPB2P08579 225 aaKnown RBP13.61□□□□□ -0.23
CLN3-213ENST00000565047 CT45A8P0DMV1 189 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 CT45A9P0DMV2 189 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 MYL2P10916 166 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 ADH7P40394 386 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 PPICP45877 212 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 ALDH9A1P49189 494 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 NAA20P61599 178 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 ACSM2AQ08AH3 577 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 CT45A2Q5DJT8 189 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 HLA-DQA1Q5Y7H0 255 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 ACSM2BQ68CK6 577 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 ZNF585AQ6P3V2 769 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 ACAD11Q709F0 780 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 LIX1LQ8IVB5 337 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 RDH11Q8TC12 318 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 RNF138Q8WVD3 245 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 UBLCP1Q8WVY7 318 aaPredicted RBP13.61□□□□□ -0.23
CLN3-213ENST00000565047 ASB5Q8WWX0 329 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 SARAFQ96BY9 339 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 ERP27Q96DN0 273 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 HSPBAP1Q96EW2 488 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 TMEM41AQ96HV5 264 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 GNRHR2Q96P88 292 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 NODALQ96S42 347 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 SLC6A15Q9H2J7 730 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 EHD3Q9NZN3 535 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 CFL2Q9Y281 166 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 ZNF780BQ9Y6R6 833 aa13.61□□□□□ -0.23
CLN3-213ENST00000565047 TACC2O95359 2948 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 CREBBPQ92793 2442 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 A0A0G2JNJ9 132 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 H3BQF6 201 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 ACOX3O15254 700 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 WDR1O75083 606 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 UGT2B11O75310 529 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 NME6O75414 186 aaPredicted RBP13.6□□□□□ -0.23
CLN3-213ENST00000565047 CPA3P15088 417 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 KRT4P19013 534 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 DDCP20711 480 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 PTPN6P29350 595 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 GSTM5P46439 218 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 CCT5P48643 541 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 TMED10P49755 219 aaKnown RBP13.6□□□□□ -0.23
CLN3-213ENST00000565047 CDK9P50750 372 aaKnown RBP13.6□□□□□ -0.23
CLN3-213ENST00000565047 HCFC1P51610 2035 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 NRG3P56975 720 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 CRYZQ08257 329 aaKnown RBP13.6□□□□□ -0.23
CLN3-213ENST00000565047 HEPACAMQ14CZ8 416 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 NNATQ16517 81 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 NHSL2Q5HYW2 709 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 TMEM198Q66K66 360 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 TIGD3Q6B0B8 471 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 FAM71E1Q6IPT2 247 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 B3GNT6Q6ZMB0 384 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 NUP54Q7Z3B4 507 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 GDF7Q7Z4P5 450 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 CCNYL1Q8N7R7 359 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 OR9A2Q8NGT5 310 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 OMA1Q96E52 524 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 C14orf79Q96F83 325 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 ZNF597Q96LX8 424 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 VSTM2LQ96N03 204 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 BTBD9Q96Q07 612 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 EBPLQ9BY08 206 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 RUBCNLQ9H714 662 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 SLC35C2Q9NQQ7 365 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 MKS1Q9NXB0 559 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 TAS2R7Q9NYW3 318 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 Q9UFV3 132 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 BCAP29Q9UHQ4 241 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 C15orf41Q9Y2V0 281 aa13.6□□□□□ -0.23
CLN3-213ENST00000565047 NKX2-6A6NCS4 301 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 FRG2CA6NGY1 282 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 FIGNL2A6NMB9 653 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 MYO1GB0I1T2 1018 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 KDM4EB2RXH2 506 aaPredicted RBP13.59□□□□□ -0.23
CLN3-213ENST00000565047 B4DXG7 233 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 PLOD3O60568 738 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 CDH16O75309 829 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 HOXD4P09016 255 aaPredicted RBP13.59□□□□□ -0.23
CLN3-213ENST00000565047 ANXA4P09525 319 aaPredicted RBP13.59□□□□□ -0.23
CLN3-213ENST00000565047 NUDT17P0C025 328 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 KRT15P19012 456 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 PRPH2P23942 346 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 MSX1P28360 303 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 TRPC1P48995 793 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 KRTAP10-9P60411 292 aa13.59□□□□□ -0.23
CLN3-213ENST00000565047 DCAF7P61962 342 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 142.3 ms