RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 SNX4O95219 450 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 ESRRBO95718 433 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 ENO1P06733 434 aaKnown RBP9.42□□□□□ -0.9
CLK3-205ENST00000561673 IL3P08700 152 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 HOXD4P09016 255 aaPredicted RBP9.42□□□□□ -0.9
CLK3-205ENST00000561673 DRD2P14416 443 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 IGFBP2P18065 325 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 GDF1P27539 372 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 MSX1P28360 303 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 ADH7P40394 386 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 TMED10P49755 219 aaKnown RBP9.42□□□□□ -0.9
CLK3-205ENST00000561673 EMDP50402 254 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 FOXA1P55317 472 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 KRTAP10-9P60411 292 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 MRPS35P82673 323 aaKnown RBP9.42□□□□□ -0.9
CLK3-205ENST00000561673 BTKQ06187 659 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 ACSM2AQ08AH3 577 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 SPIN4Q56A73 249 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 C1orf185Q5T7R7 199 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 ACSM2BQ68CK6 577 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 SCIMPQ6UWF3 145 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 LIX1LQ8IVB5 337 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 CNPY4Q8N129 248 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 CCNYL1Q8N7R7 359 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 EIF1ADQ8N9N8 165 aaKnown RBP9.42□□□□□ -0.9
CLK3-205ENST00000561673 C16orf78Q8WTQ4 265 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 C11orf24Q96F05 449 aaPredicted RBP9.42□□□□□ -0.9
CLK3-205ENST00000561673 C14orf79Q96F83 325 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 LCORQ96JN0 433 aaPredicted RBP9.42□□□□□ -0.9
CLK3-205ENST00000561673 ZNF597Q96LX8 424 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 ITPAQ9BY32 194 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 UBQLN3Q9H347 655 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 ANKRA2Q9H9E1 313 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 MID1IP1Q9NPA3 183 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 Q9UFV3 132 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 CFL2Q9Y281 166 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 STK38LQ9Y2H1 464 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 PCDHGB3Q9Y5G1 929 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 PKDREJQ9NTG1 2253 aa9.42□□□□□ -0.9
CLK3-205ENST00000561673 C15orf38-AP3S2A0A0A6YYH1 394 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 CCDC151A5D8V7 595 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 ACOX3O15254 700 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 NME6O75414 186 aaPredicted RBP9.41□□□□□ -0.9
CLK3-205ENST00000561673 PROCP04070 461 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 HPNP05981 417 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 MYL2P10916 166 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 GABRA1P14867 456 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 NAGAP17050 411 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 KRT15P19012 456 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 DRD5P21918 477 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 ELAVL4P26378 380 aaKnown RBP9.41□□□□□ -0.9
CLK3-205ENST00000561673 PPICP45877 212 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 SLCO1A2P46721 670 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 ZFP36L2P47974 494 aaKnown RBP9.41□□□□□ -0.9
CLK3-205ENST00000561673 CDK9P50750 372 aaKnown RBP9.41□□□□□ -0.9
CLK3-205ENST00000561673 NAGLUP54802 743 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 RPP38P78345 283 aaKnown RBP9.41□□□□□ -0.9
CLK3-205ENST00000561673 TLE4Q04727 773 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 HEPACAMQ14CZ8 416 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 ZNF628Q5EBL2 1059 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 GALNT18Q6P9A2 607 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 ZYG11AQ6WRX3 759 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 NUP54Q7Z3B4 507 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 ULK2Q8IYT8 1036 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 LIX1Q8N485 282 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 OR9A2Q8NGT5 310 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 UBLCP1Q8WVY7 318 aaPredicted RBP9.41□□□□□ -0.9
CLK3-205ENST00000561673 KAT2AQ92830 837 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 HGDQ93099 445 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 EXOSC8Q96B26 276 aaKnown RBP9.41□□□□□ -0.9
CLK3-205ENST00000561673 TRIM44Q96DX7 344 aaPredicted RBP9.41□□□□□ -0.9
CLK3-205ENST00000561673 OMA1Q96E52 524 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 CCDC126Q96EE4 140 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 HSPBAP1Q96EW2 488 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 TMEM41AQ96HV5 264 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 NODALQ96S42 347 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 TIMP4Q99727 224 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 EBPLQ9BY08 206 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 C12orf65Q9H3J6 166 aaKnown RBP9.41□□□□□ -0.9
CLK3-205ENST00000561673 GALNT9Q9HCQ5 603 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 PFDN4Q9NQP4 134 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 EHD3Q9NZN3 535 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 PRODH2Q9UF12 536 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 C15orf41Q9Y2V0 281 aa9.41□□□□□ -0.9
CLK3-205ENST00000561673 FRG2CA6NGY1 282 aa9.4□□□□□ -0.9
CLK3-205ENST00000561673 AHRRA9YTQ3 701 aa9.4□□□□□ -0.9
CLK3-205ENST00000561673 KDM4EB2RXH2 506 aaPredicted RBP9.4□□□□□ -0.9
CLK3-205ENST00000561673 GNB5O14775 395 aa9.4□□□□□ -0.9
CLK3-205ENST00000561673 TO15178 435 aa9.4□□□□□ -0.9
CLK3-205ENST00000561673 PLIN3O60664 434 aa9.4□□□□□ -0.9
CLK3-205ENST00000561673 ICOSLGO75144 302 aa9.4□□□□□ -0.9
CLK3-205ENST00000561673 UGT2B11O75310 529 aa9.4□□□□□ -0.9
CLK3-205ENST00000561673 GLRA3O75311 464 aa9.4□□□□□ -0.9
CLK3-205ENST00000561673 BCAS2O75934 225 aaPredicted RBP9.4□□□□□ -0.9
CLK3-205ENST00000561673 ANXA4P09525 319 aaPredicted RBP9.4□□□□□ -0.9
CLK3-205ENST00000561673 CT45A8P0DMV1 189 aa9.4□□□□□ -0.9
CLK3-205ENST00000561673 CT45A9P0DMV2 189 aa9.4□□□□□ -0.9
CLK3-205ENST00000561673 TIA1P31483 386 aaKnown RBP eCLIP9.4□□□□□ -0.9
CLK3-205ENST00000561673 CRHR1P34998 444 aa9.4□□□□□ -0.9
CLK3-205ENST00000561673 PTGDSP41222 190 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms