RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 NCALDP61601 193 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 ZNF177Q13360 481 aaPredicted RBP4.87□□□□□ -1.63
USP40-213ENST00000483216 MED21Q13503 144 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 ZCWPW2Q504Y3 356 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 FAM133BQ5BKY9 247 aaKnown RBP4.87□□□□□ -1.63
USP40-213ENST00000483216 CFAP157Q5JU67 520 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 SEL1L2Q5TEA6 688 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 TRAT1Q6PIZ9 186 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 FAM43BQ6ZT52 329 aaPredicted RBP4.87□□□□□ -1.63
USP40-213ENST00000483216 STOX1Q6ZVD7 989 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 H2AFVQ71UI9 128 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 SPATA19Q7Z5L4 167 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 SLC22A15Q8IZD6 547 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 ALLCQ8N6M5 410 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 SETD6Q8TBK2 473 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 CKAP2Q8WWK9 683 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 NEDD4LQ96PU5 975 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 IL12RB2Q99665 862 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 SPATA16Q9BXB7 569 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 NT5C3AQ9H0P0 336 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 ADAM22Q9P0K1 906 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 SATB2Q9UPW6 733 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 STK38LQ9Y2H1 464 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.87□□□□□ -1.63
USP40-213ENST00000483216 FRMPD4Q14CM0 1322 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 MYH3P11055 1940 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 BCL9O00512 1426 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 EP400Q96L91 3159 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 MYH7P12883 1935 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 IGHV4-30-2A0A087WSY4 118 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 C5orf52A6NGY3 159 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 TMEM110-MUSTN1A8MSY1 372 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 PRSS46E5RG02 174 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 SPECC1L-ADORA2AF8WAN1 911 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 RNF103O00237 685 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 GPAA1O43292 621 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 RAD51CO43502 376 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 NXPH4O95158 308 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 TGDSO95455 350 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 FAM58BPP0C7Q3 252 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 PABPC4LP0CB38 370 aaKnown RBP4.86□□□□□ -1.63
USP40-213ENST00000483216 POLR2EP19388 210 aaKnown RBP4.86□□□□□ -1.63
USP40-213ENST00000483216 ZNF10P21506 573 aaPredicted RBP4.86□□□□□ -1.63
USP40-213ENST00000483216 PSMB4P28070 264 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 TIA1P31483 386 aaKnown RBP eCLIP4.86□□□□□ -1.63
USP40-213ENST00000483216 GP5P40197 560 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 RCN2Q14257 317 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 LIN52Q52LA3 116 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 HSP90AA4PQ58FG1 418 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 CENPPQ6IPU0 288 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.86□□□□□ -1.63
USP40-213ENST00000483216 TMEM182Q6ZP80 229 aaPredicted RBP4.86□□□□□ -1.63
USP40-213ENST00000483216 DEFB132Q7Z7B7 95 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 TMEM110Q86TL2 294 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 ERICH1Q86X53 443 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 THNSL1Q8IYQ7 743 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 MYOCDQ8IZQ8 938 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 Q8N377 158 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 ERMNQ8TAM6 284 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 ST6GALNAC6Q969X2 333 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 LURAP1Q96LR2 239 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 PRMT1Q99873 361 aaKnown RBP4.86□□□□□ -1.63
USP40-213ENST00000483216 LY9Q9HBG7 655 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 PALMDQ9NP74 551 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 KCNMB3Q9NPA1 279 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 FETUBQ9UGM5 382 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 PCYOX1Q9UHG3 505 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 RUVBL2Q9Y230 463 aaKnown RBP4.86□□□□□ -1.63
USP40-213ENST00000483216 KLK4Q9Y5K2 254 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 CSAG2Q9Y5P2 127 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 SMAD5-AS1Q9Y6J3 95 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 COLEC10Q9Y6Z7 277 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 RIC1Q4ADV7 1423 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 C10orf71Q711Q0 1435 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 NRAPQ86VF7 1730 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 DOT1LQ8TEK3 1739 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 NUP98P52948 1817 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 LAMA4Q16363 1823 aa4.86□□□□□ -1.63
USP40-213ENST00000483216 GOLGA8QA0A0J9YX86 632 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 hCG_38984A0A1B0GV85 526 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 IQCMA0A1B0GVH7 501 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 GTPBP10A4D1E9 387 aaKnown RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 GOLGA8OA6NCC3 632 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 FAM47DPA6NHR8 397 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 ERVV-1B6SEH8 477 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 GOLGA8NF8WBI6 632 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 H3BMM5 538 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 GYG2O15488 501 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 MOCS2O96007 188 aaPredicted RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 OAS1P00973 400 aaKnown RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 ABHD2P08910 425 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 GATA2P23769 480 aaPredicted RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 PHBP35232 272 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 RPL5P46777 297 aaKnown RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 HADHBP55084 474 aaKnown RBP4.85□□□□□ -1.63
USP40-213ENST00000483216 TIMM10P62072 90 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 ESRRGP62508 458 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 ASIC1P78348 528 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 LGSNQ5TDP6 509 aa4.85□□□□□ -1.63
USP40-213ENST00000483216 RWDD4Q6NW29 188 aaKnown RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms