RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 RBM45Q8IUH3 476 aaKnown RBP17.13■□□□□ 0.33
COL9A3-205ENST00000466192 DNASE2BQ8WZ79 361 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 ALPK1Q96QP1 1244 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 OR7D2Q96RA2 312 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 WFDC6Q9BQY6 131 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 ZNF701M0R085 212 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-205ENST00000466192 CYR61O00622 381 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 SEMA7AO75326 666 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 IMPDH2P12268 514 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 ANXA11P50995 505 aaKnown RBP17.13■□□□□ 0.33
COL9A3-205ENST00000466192 CRISP3P54108 245 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 C6orf132Q5T0Z8 1188 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 FAM92BQ6ZTR7 304 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 MCATQ8IVS2 390 aaKnown RBP17.13■□□□□ 0.33
COL9A3-205ENST00000466192 UBALD2Q8IYN6 164 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 SAMD14Q8IZD0 417 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-205ENST00000466192 TAGAPQ8N103 731 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 CA13Q8N1Q1 262 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 ARHGEF39Q8N4T4 335 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 SIMC1Q8NDZ2 872 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 GTPBP3Q969Y2 492 aaKnown RBP17.13■□□□□ 0.33
COL9A3-205ENST00000466192 ZNF354BQ96LW1 612 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 RHNO1Q9BSD3 238 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 BCL2L10Q9HD36 194 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 PRDM9Q9NQV7 894 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 POFUT2Q9Y2G5 429 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 HCN4Q9Y3Q4 1203 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 C19orf67A6NJJ6 358 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 E9PQ18 207 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 FAM227AF5H4B4 570 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 H3BMQ9 156 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 SGK494L7N484 410 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 LDB3O75112 727 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 CCNB2O95067 398 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 CPMP14384 443 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 SOX18P35713 384 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 MAPK10P53779 464 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 SHC2P98077 582 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 TCTN3Q6NUS6 607 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 DEF8Q6ZN54 512 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 WDR53Q7Z5U6 358 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-205ENST00000466192 COMTD1Q86VU5 262 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 ENTHD1Q8IYW4 607 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 OR4D11Q8NGI4 311 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 ZNF420Q8TAQ5 688 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-205ENST00000466192 RASSF5Q8WWW0 418 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 COG8Q96MW5 612 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 DCUN1D5Q9BTE7 237 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 DGCR6LQ9BY27 220 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-205ENST00000466192 ZNF556Q9HAH1 456 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 NTMQ9P121 344 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 KCND3Q9UK17 655 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 HEMK1Q9Y5R4 338 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-205ENST00000466192 ASXL3Q9C0F0 2248 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 SEC14L2O76054 403 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 PROX2Q3B8N5 592 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 COLEC12Q5KU26 742 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 GTF2IRD2BQ6EKJ0 949 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 OGFOD3Q6PK18 319 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 GTF2IRD2Q86UP8 949 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 KRT73Q86Y46 540 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 DNAJC22Q8N4W6 341 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 AQP11Q8NBQ7 271 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 BBS10Q8TAM1 723 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 NMNAT1Q9HAN9 279 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-205ENST00000466192 SCN3BQ9NY72 215 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 ERVK-18Q9QC07 812 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 TPRKBQ9Y3C4 175 aa17.12■□□□□ 0.33
COL9A3-205ENST00000466192 ARID1BQ8NFD5 2236 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-205ENST00000466192 TRBV4-1A0A0J9YWV2 114 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 FGF17O60258 216 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 WBP4O75554 376 aaKnown RBP17.11■□□□□ 0.33
COL9A3-205ENST00000466192 PIAS2O75928 621 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 ATE1O95260 518 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 CXCR4P61073 352 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 SLC35A2P78381 396 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 GPAT3Q53EU6 434 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 FGD3Q5JSP0 725 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 LACC1Q8IV20 430 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 ZNF540Q8NDQ6 660 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 OR9A4Q8NGU2 314 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 ACTRT3Q9BYD9 372 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 GALNT8Q9NY28 637 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 SPACA6W5XKT8 324 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 TMX2-CTNND1H3BSU7 103 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 BCAT2O15382 392 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-205ENST00000466192 RDH16O75452 317 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 MED26O95402 600 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 PORP16435 677 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-205ENST00000466192 PCMT1P22061 227 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 KRT20P35900 424 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 GFERP55789 205 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 NUP107P57740 925 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 EMX1Q04741 257 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-205ENST00000466192 NPTX1Q15818 432 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 PRTGQ2VWP7 1150 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 C14orf28Q4W4Y0 310 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 APH1BQ8WW43 257 aa17.11■□□□□ 0.33
COL9A3-205ENST00000466192 DOK1Q99704 481 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms