RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 FETUBQ9UGM5 382 aa17.88■□□□□ 0.45
LIME1-201ENST00000309546 ITGB1BP2Q9UKP3 347 aa17.88■□□□□ 0.45
LIME1-201ENST00000309546 A0A1W2PPM1 405 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 FOXO6A8MYZ6 492 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 GNB5O14775 395 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 PPM1BO75688 479 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 IGFBP2P18065 325 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 TIA1P31483 386 aaKnown RBP eCLIP17.87■□□□□ 0.45
LIME1-201ENST00000309546 PKNOX1P55347 436 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 RAE1P78406 368 aaKnown RBP17.87■□□□□ 0.45
LIME1-201ENST00000309546 SPIN4Q56A73 249 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 DESI1Q6ICB0 168 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 WDR53Q7Z5U6 358 aaPredicted RBP17.87■□□□□ 0.45
LIME1-201ENST00000309546 ULK2Q8IYT8 1036 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 CCDC116Q8IYX3 515 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 CDC26Q8NHZ8 85 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 TRIM44Q96DX7 344 aaPredicted RBP17.87■□□□□ 0.45
LIME1-201ENST00000309546 ZNF681Q96N22 645 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 GNRHR2Q96P88 292 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 TREX2Q9BQ50 279 aaPredicted RBP17.87■□□□□ 0.45
LIME1-201ENST00000309546 GSTO2Q9H4Y5 243 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 GIMAP4Q9NUV9 329 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 PRODH2Q9UF12 536 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 DCDC2Q9UHG0 476 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 ZNF639Q9UID6 485 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 C15orf41Q9Y2V0 281 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 DCHS2Q6V1P9 2916 aa17.87■□□□□ 0.45
LIME1-201ENST00000309546 CSMD2Q7Z408 3487 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 CCDC151A5D8V7 595 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 SMIM23A6NLE4 172 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 GLRA3O75311 464 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 HOXD4P09016 255 aaPredicted RBP17.86■□□□□ 0.45
LIME1-201ENST00000309546 MYL2P10916 166 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 SOX18P35713 384 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 CRYZQ08257 329 aaKnown RBP17.86■□□□□ 0.45
LIME1-201ENST00000309546 SPDYAQ5MJ70 313 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 FNDC7Q5VTL7 733 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 ANGPTL8Q6UXH0 198 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 LIX1LQ8IVB5 337 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 OR9A2Q8NGT5 310 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 C16orf78Q8WTQ4 265 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 UBLCP1Q8WVY7 318 aaPredicted RBP17.86■□□□□ 0.45
LIME1-201ENST00000309546 CTHRC1Q96CG8 243 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 HSPBAP1Q96EW2 488 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 TMEM41AQ96HV5 264 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 NODALQ96S42 347 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 OSBPL11Q9BXB4 747 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 UBQLN3Q9H347 655 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 ANKRA2Q9H9E1 313 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 MCCC2Q9HCC0 563 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 KLRF1Q9NZS2 232 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 EMCNQ9ULC0 261 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 SLC6A5Q9Y345 797 aa17.86■□□□□ 0.45
LIME1-201ENST00000309546 PDZD2O15018 2839 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 ACOX3O15254 700 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 CRCPO75575 148 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 DRD2P14416 443 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 NAGAP17050 411 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 SLCO1A2P46721 670 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 EMDP50402 254 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 CDK9P50750 372 aaKnown RBP17.85■□□□□ 0.45
LIME1-201ENST00000309546 FOXA1P55317 472 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 HEPACAMQ14CZ8 416 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 ZNF628Q5EBL2 1059 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 ZYG11AQ6WRX3 759 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 DMRTC2Q8IXT2 367 aaPredicted RBP17.85■□□□□ 0.45
LIME1-201ENST00000309546 OR1J4Q8NGS1 313 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 KAT2AQ92830 837 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 HGDQ93099 445 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 CCDC126Q96EE4 140 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 SENP1Q9P0U3 644 aa17.85■□□□□ 0.45
LIME1-201ENST00000309546 C2orf72A6NCS6 295 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 FAM47E-STBD1D6RA91 191 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 CDH16O75309 829 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 UGT2B11O75310 529 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 SHBGP04278 402 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 HPNP05981 417 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 WNT3P56703 355 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 DCAF7P61962 342 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 MYBPHQ13203 477 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 IMPG1Q17R60 797 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 ERCC6LQ2NKX8 1250 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 SLC25A35Q3KQZ1 300 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 EIPR1Q53HC9 387 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 WIPI1Q5MNZ9 446 aaPredicted RBP17.84■□□□□ 0.45
LIME1-201ENST00000309546 RIPPLY2Q5TAB7 128 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 TIGD3Q6B0B8 471 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 NUP54Q7Z3B4 507 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 CLYBLQ8N0X4 340 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 CCDC63Q8NA47 563 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 ZNF675Q8TD23 568 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 ZNF559Q9BR84 538 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 GALNT9Q9HCQ5 603 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 MAPRE3Q9UPY8 281 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 CAMK2AQ9UQM7 478 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 PCDHGB3Q9Y5G1 929 aa17.84■□□□□ 0.45
LIME1-201ENST00000309546 PRAMEF25A6NGN4 478 aa17.83■□□□□ 0.44
LIME1-201ENST00000309546 FRG2CA6NGY1 282 aa17.83■□□□□ 0.44
LIME1-201ENST00000309546 G3V2L1 256 aa17.83■□□□□ 0.44
LIME1-201ENST00000309546 UBFD1O14562 309 aaKnown RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms