RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 EFHD1Q9BUP0 239 aa8.8□□□□□ -1
RFX3-201ENST00000302303 CNPPD1Q9BV87 410 aa8.8□□□□□ -1
RFX3-201ENST00000302303 OR8D2Q9GZM6 311 aa8.8□□□□□ -1
RFX3-201ENST00000302303 TPT1P8Q9HAU6 139 aa8.8□□□□□ -1
RFX3-201ENST00000302303 MMP25Q9NPA2 562 aa8.8□□□□□ -1
RFX3-201ENST00000302303 ZCCHC3Q9NUD5 404 aaKnown RBP8.8□□□□□ -1
RFX3-201ENST00000302303 CMTM6Q9NX76 183 aa8.8□□□□□ -1
RFX3-201ENST00000302303 C19orf25Q9UFG5 118 aaPredicted RBP8.8□□□□□ -1
RFX3-201ENST00000302303 VPS4AQ9UN37 437 aa8.8□□□□□ -1
RFX3-201ENST00000302303 SNX8Q9Y5X2 465 aa8.8□□□□□ -1
RFX3-201ENST00000302303 IGF2RP11717 2491 aa8.8□□□□□ -1
RFX3-201ENST00000302303 MED13Q9UHV7 2174 aa8.8□□□□□ -1
RFX3-201ENST00000302303 NSG1A0A0A6YYJ2 146 aa8.8□□□□□ -1
RFX3-201ENST00000302303 RNF103-CHMP3A0A140T963 221 aa8.8□□□□□ -1
RFX3-201ENST00000302303 CDC14CA4D256 554 aa8.8□□□□□ -1
RFX3-201ENST00000302303 B2RBV5 119 aa8.8□□□□□ -1
RFX3-201ENST00000302303 TNFRSF21O75509 655 aa8.8□□□□□ -1
RFX3-201ENST00000302303 PRKAR1AP10644 381 aa8.8□□□□□ -1
RFX3-201ENST00000302303 ITGAMP11215 1152 aa8.8□□□□□ -1
RFX3-201ENST00000302303 GPC1P35052 558 aa8.8□□□□□ -1
RFX3-201ENST00000302303 NUDT2P50583 147 aa8.8□□□□□ -1
RFX3-201ENST00000302303 PRKAG1P54619 331 aa8.8□□□□□ -1
RFX3-201ENST00000302303 SOX8P57073 446 aa8.8□□□□□ -1
RFX3-201ENST00000302303 CORO7P57737 925 aa8.8□□□□□ -1
RFX3-201ENST00000302303 RPS26P62854 115 aaKnown RBP8.8□□□□□ -1
RFX3-201ENST00000302303 RNF4P78317 190 aa8.8□□□□□ -1
RFX3-201ENST00000302303 FUT5Q11128 374 aa8.8□□□□□ -1
RFX3-201ENST00000302303 CDC20Q12834 499 aa8.8□□□□□ -1
RFX3-201ENST00000302303 MYBPC3Q14896 1274 aa8.8□□□□□ -1
RFX3-201ENST00000302303 RGNQ15493 299 aa8.8□□□□□ -1
RFX3-201ENST00000302303 ADRM1Q16186 407 aa8.8□□□□□ -1
RFX3-201ENST00000302303 AP1ARQ63HQ0 302 aa8.8□□□□□ -1
RFX3-201ENST00000302303 CALHM3Q86XJ0 350 aa8.8□□□□□ -1
RFX3-201ENST00000302303 RAB43Q86YS6 212 aa8.8□□□□□ -1
RFX3-201ENST00000302303 HORMAD2Q8N7B1 307 aa8.8□□□□□ -1
RFX3-201ENST00000302303 KDF1Q8NAX2 398 aaPredicted RBP8.8□□□□□ -1
RFX3-201ENST00000302303 PNPT1Q8TCS8 783 aaKnown RBP8.8□□□□□ -1
RFX3-201ENST00000302303 ROPN1LQ96C74 230 aa8.8□□□□□ -1
RFX3-201ENST00000302303 SLC35A4Q96G79 324 aa8.8□□□□□ -1
RFX3-201ENST00000302303 YIPF4Q9BSR8 244 aa8.8□□□□□ -1
RFX3-201ENST00000302303 LMF2Q9BU23 707 aaKnown RBP8.8□□□□□ -1
RFX3-201ENST00000302303 RSPO3Q9BXY4 272 aaPredicted RBP8.8□□□□□ -1
RFX3-201ENST00000302303 KAT8Q9H7Z6 458 aaKnown RBP8.8□□□□□ -1
RFX3-201ENST00000302303 LIN28AQ9H9Z2 209 aaKnown RBP8.8□□□□□ -1
RFX3-201ENST00000302303 FOLH1BQ9HBA9 442 aa8.8□□□□□ -1
RFX3-201ENST00000302303 DDX18Q9NVP1 670 aaKnown RBP8.8□□□□□ -1
RFX3-201ENST00000302303 ABCD2Q9UBJ2 740 aa8.8□□□□□ -1
RFX3-201ENST00000302303 PCDHGB4Q9UN71 923 aa8.8□□□□□ -1
RFX3-201ENST00000302303 USP22Q9UPT9 525 aa8.8□□□□□ -1
RFX3-201ENST00000302303 GPR55Q9Y2T6 319 aaPredicted RBP8.8□□□□□ -1
RFX3-201ENST00000302303 HEMK1Q9Y5R4 338 aaPredicted RBP8.8□□□□□ -1
RFX3-201ENST00000302303 URB1O60287 2271 aaKnown RBP8.79□□□□□ -1
RFX3-201ENST00000302303 CHD8Q9HCK8 2581 aa8.79□□□□□ -1
RFX3-201ENST00000302303 ZNF891A8MT65 544 aaPredicted RBP8.79□□□□□ -1
RFX3-201ENST00000302303 K7ENP7 123 aa8.79□□□□□ -1
RFX3-201ENST00000302303 HMGN4O00479 90 aa8.79□□□□□ -1
RFX3-201ENST00000302303 NME4O00746 187 aa8.79□□□□□ -1
RFX3-201ENST00000302303 PRAMEF2O60811 474 aa8.79□□□□□ -1
RFX3-201ENST00000302303 DNAJB5O75953 348 aa8.79□□□□□ -1
RFX3-201ENST00000302303 NKX2-2O95096 273 aa8.79□□□□□ -1
RFX3-201ENST00000302303 ZIC2O95409 532 aaPredicted RBP8.79□□□□□ -1
RFX3-201ENST00000302303 NADKO95544 446 aaPredicted RBP8.79□□□□□ -1
RFX3-201ENST00000302303 NUDT7P0C024 238 aa8.79□□□□□ -1
RFX3-201ENST00000302303 BMP2P12643 396 aa8.79□□□□□ -1
RFX3-201ENST00000302303 ETFAP13804 333 aa8.79□□□□□ -1
RFX3-201ENST00000302303 SOAT1P35610 550 aa8.79□□□□□ -1
RFX3-201ENST00000302303 MTPNP58546 118 aa8.79□□□□□ -1
RFX3-201ENST00000302303 VAC14Q08AM6 782 aa8.79□□□□□ -1
RFX3-201ENST00000302303 CHAF1BQ13112 559 aa8.79□□□□□ -1
RFX3-201ENST00000302303 LASP1Q14847 261 aaKnown RBP8.79□□□□□ -1
RFX3-201ENST00000302303 EXT1Q16394 746 aa8.79□□□□□ -1
RFX3-201ENST00000302303 DUSP5Q16690 384 aa8.79□□□□□ -1
RFX3-201ENST00000302303 BTBD16Q32M84 506 aa8.79□□□□□ -1
RFX3-201ENST00000302303 MMEL1Q495T6 779 aa8.79□□□□□ -1
RFX3-201ENST00000302303 LACTB2Q53H82 288 aaPredicted RBP8.79□□□□□ -1
RFX3-201ENST00000302303 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.79□□□□□ -1
RFX3-201ENST00000302303 INO80CQ6PI98 192 aaPredicted RBP8.79□□□□□ -1
RFX3-201ENST00000302303 LYPD8Q6UX82 237 aa8.79□□□□□ -1
RFX3-201ENST00000302303 RNF130Q86XS8 419 aa8.79□□□□□ -1
RFX3-201ENST00000302303 PTOV1Q86YD1 416 aa8.79□□□□□ -1
RFX3-201ENST00000302303 PCYOX1LQ8NBM8 494 aa8.79□□□□□ -1
RFX3-201ENST00000302303 OR4N2Q8NGD1 307 aa8.79□□□□□ -1
RFX3-201ENST00000302303 OR8J3Q8NGG0 315 aa8.79□□□□□ -1
RFX3-201ENST00000302303 OR52N2Q8NGI0 321 aa8.79□□□□□ -1
RFX3-201ENST00000302303 OR5D16Q8NGK9 328 aa8.79□□□□□ -1
RFX3-201ENST00000302303 OR8K3Q8NH51 312 aa8.79□□□□□ -1
RFX3-201ENST00000302303 FAM110BQ8TC76 370 aa8.79□□□□□ -1
RFX3-201ENST00000302303 SNRNP27Q8WVK2 155 aaKnown RBP8.79□□□□□ -1
RFX3-201ENST00000302303 THAP4Q8WY91 577 aa8.79□□□□□ -1
RFX3-201ENST00000302303 OTUB1Q96FW1 271 aaPredicted RBP8.79□□□□□ -1
RFX3-201ENST00000302303 VMP1Q96GC9 406 aa8.79□□□□□ -1
RFX3-201ENST00000302303 ZNF583Q96ND8 569 aa8.79□□□□□ -1
RFX3-201ENST00000302303 IP6K3Q96PC2 410 aa8.79□□□□□ -1
RFX3-201ENST00000302303 BTBD9Q96Q07 612 aa8.79□□□□□ -1
RFX3-201ENST00000302303 LMF1Q96S06 567 aa8.79□□□□□ -1
RFX3-201ENST00000302303 ITPAQ9BY32 194 aa8.79□□□□□ -1
RFX3-201ENST00000302303 WWTR1Q9GZV5 400 aa8.79□□□□□ -1
RFX3-201ENST00000302303 NXF5Q9H1B4 397 aaKnown RBP8.79□□□□□ -1
RFX3-201ENST00000302303 C1orf21Q9H246 121 aa8.79□□□□□ -1
RFX3-201ENST00000302303 C3orf14Q9HBI5 128 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms