RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 GPALPP1Q8IXQ4 340 aa14.05□□□□□ -0.16
LIG1-219ENST00000600055 CPSF7Q8N684 471 aaKnown RBP14.05□□□□□ -0.16
LIG1-219ENST00000600055 PSD4Q8NDX1 1056 aa14.05□□□□□ -0.16
LIG1-219ENST00000600055 OR7G2Q8NG99 324 aa14.05□□□□□ -0.16
LIG1-219ENST00000600055 SLC22A8Q8TCC7 542 aa14.05□□□□□ -0.16
LIG1-219ENST00000600055 ZNF75CPQ92670 426 aaPredicted RBP14.05□□□□□ -0.16
LIG1-219ENST00000600055 PPCDCQ96CD2 204 aa14.05□□□□□ -0.16
LIG1-219ENST00000600055 AMDHD1Q96NU7 426 aa14.05□□□□□ -0.16
LIG1-219ENST00000600055 ITPAQ9BY32 194 aa14.05□□□□□ -0.16
LIG1-219ENST00000600055 DEPPQ9NTK1 212 aa14.05□□□□□ -0.16
LIG1-219ENST00000600055 OLAHQ9NV23 265 aa14.05□□□□□ -0.16
LIG1-219ENST00000600055 ZNF446Q9NWS9 450 aa14.05□□□□□ -0.16
LIG1-219ENST00000600055 SH3BP4Q9P0V3 963 aa14.05□□□□□ -0.16
LIG1-219ENST00000600055 MARCOQ9UEW3 520 aaPredicted RBP14.05□□□□□ -0.16
LIG1-219ENST00000600055 A0A0G2JMM0 328 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 A0A1W2PPB8 328 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 A0A1W2PRS3 328 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 ASPDHA6ND91 283 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 KIR3DP1A8MWS1 328 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 HMGB1P1B2RPK0 211 aaPredicted RBP14.04□□□□□ -0.16
LIG1-219ENST00000600055 DYNC1I1O14576 645 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 PDPK1O15530 556 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 PEX1O43933 1283 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 CBX6O95503 412 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 EFNA1P20827 205 aaPredicted RBP14.04□□□□□ -0.16
LIG1-219ENST00000600055 NTSP30990 170 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 RFC3P40938 356 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 ASMTP46597 345 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 MEOX1P50221 254 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 OCRLQ01968 901 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 EMX2Q04743 252 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 PDE7AQ13946 482 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 ZNF791Q3KP31 576 aaPredicted RBP14.04□□□□□ -0.16
LIG1-219ENST00000600055 RNFT1Q5M7Z0 435 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 FHL5Q5TD97 284 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 TMEM107Q6UX40 140 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 RTL4Q6ZR62 310 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 ZNF551Q7Z340 670 aaPredicted RBP14.04□□□□□ -0.16
LIG1-219ENST00000600055 TRIM42Q8IWZ5 723 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 PRR22Q8IZ63 422 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 SLC15A4Q8N697 577 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 OR7A2PQ8NGA2 310 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 RAB3IL1Q8TBN0 382 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 NR4A3Q92570 626 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 TP53INP1Q96A56 240 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 MAGED4Q96JG8 741 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 FRMD6Q96NE9 622 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 SLX1AQ9BQ83 275 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 NXF5Q9H1B4 397 aaKnown RBP14.04□□□□□ -0.16
LIG1-219ENST00000600055 TIMMDC1Q9NPL8 285 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 KLF13Q9Y2Y9 288 aaPredicted RBP14.04□□□□□ -0.16
LIG1-219ENST00000600055 SHANK1Q9Y566 2161 aa14.04□□□□□ -0.16
LIG1-219ENST00000600055 PINLYPA6NC86 204 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 SCAMP2O15127 329 aaKnown RBP14.03□□□□□ -0.16
LIG1-219ENST00000600055 ATP8B1O43520 1251 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 TBX19O60806 448 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 CRYABP02511 175 aaKnown RBP14.03□□□□□ -0.16
LIG1-219ENST00000600055 FBXO45P0C2W1 286 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 CCL3P10147 92 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 G6PDP11413 515 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 PRPS2P11908 318 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 MC3RP41968 323 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 TDGF1P3P51864 188 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 EIF2S3LQ2VIR3 472 aaKnown RBP14.03□□□□□ -0.16
LIG1-219ENST00000600055 WDR75Q8IWA0 830 aaKnown RBP14.03□□□□□ -0.16
LIG1-219ENST00000600055 TAGAPQ8N103 731 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 KRTCAP2Q8N6L1 136 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 FAM98AQ8NCA5 519 aaKnown RBP14.03□□□□□ -0.16
LIG1-219ENST00000600055 OR5M3Q8NGP4 307 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 DNAJB8Q8NHS0 232 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 SPACA9Q96E40 222 aaPredicted RBP14.03□□□□□ -0.16
LIG1-219ENST00000600055 TSPAN10Q9H1Z9 355 aaPredicted RBP14.03□□□□□ -0.16
LIG1-219ENST00000600055 MEAF6Q9HAF1 191 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 ATP6V1HQ9UI12 483 aa14.03□□□□□ -0.16
LIG1-219ENST00000600055 EIF3LQ9Y262 564 aaKnown RBP14.03□□□□□ -0.16
LIG1-219ENST00000600055 ANKUB1A6NFN9 424 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 KLRC4-KLRK1H3BQV0 150 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 SDHDO14521 159 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 PLOD3O60568 738 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 ZIC2O95409 532 aaPredicted RBP14.02□□□□□ -0.17
LIG1-219ENST00000600055 LAMP1P11279 417 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 EDN3P14138 238 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 DIO3P55073 304 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 FBXW4P57775 412 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 PPP2R2AP63151 447 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 ALDH6A1Q02252 535 aaKnown RBP14.02□□□□□ -0.17
LIG1-219ENST00000600055 HSPB3Q12988 150 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 KIRREL3Q8IZU9 778 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 GOLM1Q8NBJ4 401 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 ST6GALNAC3Q8NDV1 305 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 FAM13CQ8NE31 585 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 C17orf47Q8NEP4 570 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 OR10G3Q8NGC4 313 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 ERP27Q96DN0 273 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 ZNF764Q96H86 408 aaPredicted RBP14.02□□□□□ -0.17
LIG1-219ENST00000600055 SGCZQ96LD1 299 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 CLMPQ9H6B4 373 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 FOLH1BQ9HBA9 442 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 SH2D2AQ9NP31 389 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 NOP53Q9NZM5 478 aaKnown RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms