RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 MS4A8Q9BY19 250 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 MICAL3Q7RTP6 2002 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 RLFQ13129 1914 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 EEDO75530 441 aaKnown RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 RETP07949 1114 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 TSPAN19P0C672 248 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 CYP4B1P13584 511 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 ANXA8P13928 327 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 PGCP20142 388 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 SLC9A3P48764 834 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 RHAGQ02094 409 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 TARDBPQ13148 414 aaKnown RBP eCLIP9.3□□□□□ -0.92
LIG3-216ENST00000593099 EIF4EBP2Q13542 120 aaPredicted RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 GANABQ14697 944 aaKnown RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 PLK5Q496M5 336 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 CYBRD1Q53TN4 286 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 SVOPLQ8N434 492 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 RORBQ92753 470 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 ISL2Q96A47 359 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 ASPNQ9BXN1 380 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 SLITRK2Q9H156 845 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 TCEAL2Q9H3H9 227 aaPredicted RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 TMEM45AQ9NWC5 275 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 ICKQ9UPZ9 632 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 MYRFQ9Y2G1 1151 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 MED31Q9Y3C7 131 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 LOXL2Q9Y4K0 774 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 PCDHGA5Q9Y5G8 931 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 CNTRLQ7Z7A1 2325 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 KRBA1A5PL33 1030 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 FAM149AA5PLN7 773 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 CCDC182A6NF36 153 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 SOX1O00570 391 aaPredicted RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 GSTT1P30711 240 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 RCVRNP35243 200 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 PFN3P60673 137 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 KCNC4Q03721 635 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 EEF1A2Q05639 463 aaKnown RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 VMACQ2NL98 169 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 ZNF440Q8IYI8 595 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 ZBTB8BQ8NAP8 495 aaPredicted RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 BPIFB6Q8NFQ5 453 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 OR9A2Q8NGT5 310 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 GTPBP3Q969Y2 492 aaKnown RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 IFT27Q9BW83 186 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 SPATA9Q9BWV2 254 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 POLR2J3Q9H1A7 115 aaKnown RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 NT5DC2Q9H857 520 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 SPHK1Q9NYA1 384 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 ACTR3BQ9P1U1 418 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 ACSL6Q9UKU0 697 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 ANTXRLA6NF34 631 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 NUDT21O43809 227 aaKnown RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 UGT2B11O75310 529 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 PRKACBP22694 351 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 KCNJ5P48544 419 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 MAT1AQ00266 395 aaKnown RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 COTL1Q14019 142 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 ERV3-1Q14264 604 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 NKAIN1Q4KMZ8 207 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 C6orf15Q6UXA7 325 aaPredicted RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 ABI3BPQ7Z7G0 1075 aa9.3□□□□□ -0.92
LIG3-216ENST00000593099 SDR39U1Q9NRG7 319 aaPredicted RBP9.3□□□□□ -0.92
LIG3-216ENST00000593099 LRRC37A2A6NM11 1700 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 ZCCHC18P0CG32 403 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 PRKAR1AP10644 381 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 MC3RP41968 323 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 RPS26P62854 115 aaKnown RBP9.29□□□□□ -0.92
LIG3-216ENST00000593099 GPR141Q7Z602 305 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 KIAA0907Q7Z7F0 614 aaPredicted RBP9.29□□□□□ -0.92
LIG3-216ENST00000593099 LSMEM2Q8N112 164 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 DEFB124Q8NES8 71 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 OR52N2Q8NGI0 321 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 MOSPD2Q8NHP6 518 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 TRIM2Q9C040 744 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 SMOC1Q9H4F8 434 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 METTL8Q9H825 291 aaKnown RBP9.29□□□□□ -0.92
LIG3-216ENST00000593099 IRGMA1A4Y4 181 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 PROM1O43490 865 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 ZNF821O75541 412 aaPredicted RBP9.29□□□□□ -0.92
LIG3-216ENST00000593099 BMP1P13497 986 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 CPMP14384 443 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 ST6GAL1P15907 406 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 TBRG1Q3YBR2 411 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 LIN52Q52LA3 116 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 COQ5Q5HYK3 327 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 OPN5Q6U736 354 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 GALNT5Q7Z7M9 940 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 GALNT10Q86SR1 603 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 GALNT15Q8N3T1 639 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 OR52P1PQ8NH57 321 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 OR14A16Q8NHC5 309 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 MYDGFQ969H8 173 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 CIB1Q99828 191 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 WDR83Q9BRX9 315 aaKnown RBP9.29□□□□□ -0.92
LIG3-216ENST00000593099 OSBPL11Q9BXB4 747 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 TIGARQ9NQ88 270 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 POFUT2Q9Y2G5 429 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 LRCH1Q9Y2L9 728 aa9.29□□□□□ -0.92
LIG3-216ENST00000593099 MMACHCQ9Y4U1 282 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms