RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SYNPOQ8N3V7 929 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 LIX1Q8N485 282 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 OR2T4Q8NH00 348 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 EDAQ92838 391 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 RBP7Q96R05 134 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ACTR6Q9GZN1 396 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PPIL3Q9H2H8 161 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 UCK1Q9HA47 277 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SLC25A19Q9HC21 320 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 HHATLQ9HCP6 504 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 LTB4R2Q9NPC1 389 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 COA4Q9NYJ1 87 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 UBP1Q9NZI7 540 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PDP1Q9P0J1 537 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 SLAMF8Q9P0V8 285 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 COPS3Q9UNS2 423 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 INVSQ9Y283 1065 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 NCKAP1Q9Y2A7 1128 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 DTX4Q9Y2E6 619 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 NUBP2Q9Y5Y2 271 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 A0A0A6YYJ9 748 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 LOC285095A0A1B0GVY8 99 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 FAM240BA0A1B0GVZ2 78 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ANKRD61A6NGH8 418 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 YJEFN3A6XGL0 299 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TSPAN4O14817 238 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TSPAN3O60637 253 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TPST2O60704 377 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PRAMEF1O95521 474 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PRAMEF12O95522 483 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ESR1P03372 595 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 OPN1MWP04001 364 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 OPN1MW2P0DN77 364 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 OPN1MW3P0DN78 364 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ARSAP15289 507 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ITPKAP23677 461 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 MAP2K6P52564 334 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TPI1P60174 286 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ADIGQ0VDE8 80 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ST3GAL4Q11206 333 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 LTB4RQ15722 352 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ALG11Q2TAA5 492 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 MRM1Q6IN84 353 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 RGS7BPQ6MZT1 257 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 SLC22A25Q6T423 547 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TMEM207Q6UWW9 146 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SEZ6L2Q6UXD5 910 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 Q6ZSR9 355 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 LAX1Q8IWV1 398 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SLC44A3Q8N4M1 653 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ATG16L2Q8NAA4 619 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SLC37A3Q8NCC5 494 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 WDR36Q8NI36 951 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 SCAMP5Q8TAC9 235 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TADA1Q96BN2 335 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 FAM120BQ96EK7 910 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 ADAD1Q96M93 576 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 FOPNLQ96NB1 174 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PGLYRP2Q96PD5 576 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ERMAPQ96PL5 475 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 BBS2Q9BXC9 721 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PLA2G2FQ9BZM2 168 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 MED28Q9H204 178 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SP110Q9HB58 689 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PRMT8Q9NR22 394 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 SDHAF2Q9NX18 166 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 THUMPD1Q9NXG2 353 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 ZNF226Q9NYT6 803 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 NUDT4Q9NZJ9 180 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 REV1Q9UBZ9 1251 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PLEKHB1Q9UF11 243 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 FBXL21Q9UKT6 434 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 CORO2BQ9UQ03 480 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 CCL27Q9Y4X3 112 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 LRP4O75096 1905 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 A0A1W2PQH9 124 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 AIPO00170 330 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 GNB5O14775 395 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 MATN3O15232 486 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ATXN7O15265 892 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 ST8SIA5O15466 376 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 FGF10O15520 208 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 FABP7O15540 132 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 MAFKO60675 156 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 STC2O76061 302 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TSPAN19P0C672 248 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SLC2A2P11168 524 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 LCP1P13796 627 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SAT1P21673 171 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PPIBP23284 216 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 C21orf33P30042 268 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 PUDPQ08623 228 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SMN1Q16637 294 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 TSTQ16762 297 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 MICBQ29980 383 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 Q3ZCU0 254 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 FBXO48Q5FWF7 155 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 CD200R1LQ6Q8B3 271 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ZNF730Q6ZMV8 503 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 CHST9Q7L1S5 443 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms