RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 DAZAP2Q15038 168 aaPredicted RBP11.32□□□□□ -0.6
CPSF3-204ENST00000489403 TOMM20Q15388 145 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 NNATQ16517 81 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 DESI1Q6ICB0 168 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 METTL2BQ6P1Q9 378 aaKnown RBP11.32□□□□□ -0.6
CPSF3-204ENST00000489403 KLC3Q6P597 504 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 C17orf47Q8NEP4 570 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 MBD6Q96DN6 1003 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 MRPL1Q9BYD6 325 aaKnown RBP11.32□□□□□ -0.6
CPSF3-204ENST00000489403 RAB17Q9H0T7 212 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 EPB41L4BQ9H329 900 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 DLL4Q9NR61 685 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 AKAP6Q13023 2319 aa11.32□□□□□ -0.6
CPSF3-204ENST00000489403 MTORP42345 2549 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 TUBAL3A6NHL2 446 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 EEF1E1-BLOC1S5C9J1V9 151 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 EEF1E1O43324 174 aaKnown RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 KLK1P06870 262 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 ABCB1P08183 1280 aaPredicted RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 EPXP11678 715 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 CPMP14384 443 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 PORP16435 677 aaPredicted RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 KRT15P19012 456 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 CTSSP25774 331 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 SOX18P35713 384 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 PTGDSP41222 190 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 SERPINB8P50452 374 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 XKP51811 444 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 CCNG1P51959 295 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 DGKQP52824 942 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 NAGLUP54802 743 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 ADAM8P78325 824 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 TRAF3Q13114 568 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 SF3B4Q15427 424 aaKnown RBP eCLIP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 UAP1Q16222 522 aaPredicted RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 PRICKLE4Q2TBC4 344 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 UBAP2Q5T6F2 1119 aaKnown RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 C6orf163Q5TEZ5 329 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 TIGD3Q6B0B8 471 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 TMEM81Q6P7N7 255 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 YRDCQ86U90 279 aaKnown RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 PLD6Q8N2A8 252 aaKnown RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 VWA5B2Q8N398 1253 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 PTGR2Q8N8N7 351 aaPredicted RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 C9orf106Q8NAJ2 232 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 FAM83FQ8NEG4 500 aaPredicted RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 OR7G1Q8NGA0 311 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 OR1J4Q8NGS1 313 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 LINC01560Q8TB33 94 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 HGDQ93099 445 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 ABTB1Q969K4 478 aaPredicted RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 ATP6V1E2Q96A05 226 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 PHF21BQ96EK2 531 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 NSUN5Q96P11 429 aaKnown RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 NODALQ96S42 347 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 NTMT1Q9BV86 223 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 ITPAQ9BY32 194 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 VPS11Q9H270 941 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 GSX1Q9H4S2 264 aaPredicted RBP11.31□□□□□ -0.6
CPSF3-204ENST00000489403 METTL7AQ9H8H3 244 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 CALHM2Q9HA72 323 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 ZBTB26Q9HCK0 441 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 JKAMPQ9P055 326 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 ADAM29Q9UKF5 820 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 EDARQ9UNE0 448 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 MPDZO75970 2070 aa11.31□□□□□ -0.6
CPSF3-204ENST00000489403 ANKHD1Q8IWZ3 2542 aaKnown RBP11.3□□□□□ -0.6
CPSF3-204ENST00000489403 C2orf72A6NCS6 295 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 SNPHO15079 494 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 CDH16O75309 829 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 PPM1BO75688 479 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 ATE1O95260 518 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 RAF1P04049 648 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 TYK2P29597 1187 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 OPRM1P35372 400 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 SLCO1A2P46721 670 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 SORDQ00796 357 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 EXOSC7Q15024 291 aaKnown RBP11.3□□□□□ -0.6
CPSF3-204ENST00000489403 CCNYL2Q5T2Q4 361 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 FBXW10Q5XX13 1052 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 FRG2Q64ET8 278 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 TTC19Q6DKK2 380 aaPredicted RBP11.3□□□□□ -0.6
CPSF3-204ENST00000489403 SLC48A1Q6P1K1 146 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 FAM111BQ6SJ93 734 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 ANGPTL8Q6UXH0 198 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 COMMD6Q7Z4G1 85 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 CAMKMTQ7Z624 323 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 KIF18BQ86Y91 864 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 MMP21Q8N119 569 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 METTL4Q8N3J2 472 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 SIMC1Q8NDZ2 872 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 OMA1Q96E52 524 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 FRG2BQ96QU4 278 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 OSBPL11Q9BXB4 747 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 BRINP2Q9C0B6 783 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 PLEKHF2Q9H8W4 249 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 GALNT9Q9HCQ5 603 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 MAT2BQ9NZL9 334 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 FETUBQ9UGM5 382 aa11.3□□□□□ -0.6
CPSF3-204ENST00000489403 ZNF639Q9UID6 485 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms