RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 PCDH17O14917 1159 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 ATP6V1G1O75348 118 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 ARL6IP5O75915 188 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 RENP00797 406 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 PTNP21246 168 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 IGFALSP35858 605 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 PIGAP37287 484 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 AP3S2P59780 193 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 ZNF740Q8NDX6 193 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 MS4A4EQ96PG1 132 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 MED28Q9H204 178 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 EVA1BQ9NVM1 165 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 NKIRAS2Q9NYR9 191 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 PSME4Q14997 1843 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 ZNFX1Q9P2E3 1918 aaKnown RBP13.86□□□□□ -0.19
HDAC6-220ENST00000477528 SCDO00767 359 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 TACSTD2P09758 323 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 HIST1H1TP22492 207 aaPredicted RBP13.86□□□□□ -0.19
HDAC6-220ENST00000477528 CD40LGP29965 261 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 MTNR1AP48039 350 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 SLC3A1Q07837 685 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 ZNF267Q14586 743 aaPredicted RBP13.86□□□□□ -0.19
HDAC6-220ENST00000477528 SPCS2Q15005 226 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 RIMKLAQ8IXN7 391 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 SCAIQ8N9R8 606 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 TSEN15Q8WW01 171 aaKnown RBP13.86□□□□□ -0.19
HDAC6-220ENST00000477528 TRNT1Q96Q11 434 aaKnown RBP13.86□□□□□ -0.19
HDAC6-220ENST00000477528 GAS2L1Q99501 681 aaPredicted RBP13.86□□□□□ -0.19
HDAC6-220ENST00000477528 POLE4Q9NR33 117 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 MC3RP41968 323 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 GDPGP1Q6ZNW5 385 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 LHFPL3Q86UP9 236 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 GALNT12Q8IXK2 581 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 IQCF1Q8N6M8 205 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 SFXN5Q8TD22 340 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 GAL3ST3Q96A11 431 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 FKBP10Q96AY3 582 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 SERINC2Q96SA4 455 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 OR6C2Q9NZP2 312 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 ARFIP1P53367 373 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 PPP2R2BQ00005 443 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 IGFN1Q86VF2 1251 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 GHDCQ8N2G8 530 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 ZFP3Q96NJ6 502 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 INSM2Q96T92 566 aaPredicted RBP13.85□□□□□ -0.19
HDAC6-220ENST00000477528 TCF7L1Q9HCS4 588 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 ANTXRLA6NF34 631 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 SEC14L2O76054 403 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 HNRNPA2B1P22626 353 aaKnown RBP13.85□□□□□ -0.19
HDAC6-220ENST00000477528 DMPKQ09013 629 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 PLEKHG7Q6ZR37 379 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 ZBTB8BQ8NAP8 495 aaPredicted RBP13.85□□□□□ -0.19
HDAC6-220ENST00000477528 OR9A2Q8NGT5 310 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 HMGCLL1Q8TB92 370 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 FAM46AQ96IP4 442 aaKnown RBP13.85□□□□□ -0.19
HDAC6-220ENST00000477528 HRASLS5Q96KN8 279 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 PRRC1Q96M27 445 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 HS6ST2Q96MM7 605 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 GFM1Q96RP9 751 aaKnown RBP13.85□□□□□ -0.19
HDAC6-220ENST00000477528 TRIM2Q9C040 744 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 TMEM38AQ9H6F2 299 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 TIGARQ9NQ88 270 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 HCN2Q9UL51 889 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 TRIP12Q14669 1992 aaPredicted RBP13.85□□□□□ -0.19
HDAC6-220ENST00000477528 MAGEB3O15480 346 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 C21orf33P30042 268 aaPredicted RBP13.85□□□□□ -0.19
HDAC6-220ENST00000477528 GPR4P46093 362 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 ADAM15Q13444 863 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 FAM219BQ5XKK7 198 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 C22orf42Q6IC83 251 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 SYNPOQ8N3V7 929 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 GGHQ92820 318 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 NELL2Q99435 816 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 MS4A8Q9BY19 250 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 TBL1XR1Q9BZK7 514 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 IKZF5Q9H5V7 419 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 PRTFDC1Q9NRG1 225 aa13.85□□□□□ -0.19
HDAC6-220ENST00000477528 OLFM2O95897 454 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 S100A1P23297 94 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 PCSK6P29122 969 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 AHRP35869 848 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 GJA8P48165 433 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 KDM4DQ6B0I6 523 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 FAM71E1Q6IPT2 247 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 ZFYVE21Q9BQ24 234 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 G6PC3Q9BUM1 346 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 SMIM30A4D0T7 59 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 CLDN24A6NM45 220 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 A8MUA0 341 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 J3KTA2 159 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 M0R129 80 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 KIR2DS3Q14952 304 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 OR2L8Q8NGY9 312 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 NEIL3Q8TAT5 605 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 LMX1AQ8TE12 382 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 GATAD2BQ8WXI9 593 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 SLC41A3Q96GZ6 507 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 DPYSL5Q9BPU6 564 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 CDADC1Q9BWV3 514 aa13.84□□□□□ -0.19
HDAC6-220ENST00000477528 NKX2-4Q9H2Z4 354 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms