RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	TRAPPC6A	O75865	159 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	CPN1	P15169	458 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	SPR	P35270	261 aa	Predicted RBP	10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	OPRM1	P35372	400 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	NEK2	P51955	445 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	GFRA1	P56159	465 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	DUSP2	Q05923	314 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	KEAP1	Q14145	624 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	PCBP2	Q15366	365 aa	Known RBP eCLIP	10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	GRTP1	Q5TC63	336 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	PLXDC2	Q6UX71	529 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	C3orf62	Q6ZUJ4	267 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	GOLGA7	Q7Z5G4	137 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	NUDT13	Q86X67	352 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	KIF18B	Q86Y91	864 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	GALNT12	Q8IXK2	581 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	WDSUB1	Q8N9V3	476 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	RNF138	Q8WVD3	245 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	KCTD4	Q8WVF5	259 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	SLC44A1	Q8WWI5	657 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	CDKL2	Q92772	493 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	ABTB1	Q969K4	478 aa	Predicted RBP	10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	DACH2	Q96NX9	599 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	NODAL	Q96S42	347 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	TUBA1C	Q9BQE3	449 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	OR2B2	Q9GZK3	357 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	NMRAL1	Q9HBL8	299 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	GALNT9	Q9HCQ5	603 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	GALNT8	Q9NY28	637 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	WHRN	Q9P202	907 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	EDAR	Q9UNE0	448 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	RNF11	Q9Y3C5	154 aa		10.16	□□□□□ -0.78
PTPN7-204	ENST00000462815	RAI1	Q7Z5J4	1906 aa	Predicted RBP	10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	MED12	Q93074	2177 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	CAPN14	A8MX76	684 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	EEF1E1-BLOC1S5	C9J1V9	151 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	OR7A17	O14581	309 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	GNB5	O14775	395 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	SNPH	O15079	494 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	EEF1E1	O43324	174 aa	Known RBP	10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	PPM1B	O75688	479 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	TNFSF13	O75888	250 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	URI1	O94763	535 aa	Predicted RBP	10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	SEMA3D	O95025	777 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	RCBTB2	O95199	551 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	SIX3	O95343	332 aa	Predicted RBP	10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	ACTL6A	O96019	429 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	GSTA2	P09210	222 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	INHBB	P09529	407 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	RHOXF2B	P0C7M4	288 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	TMIGD3	P0DMS9	266 aa	Predicted RBP	10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	NAGA	P17050	411 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	CRABP2	P29373	138 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	TMED10	P49755	219 aa	Known RBP	10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	ALDH18A1	P54886	795 aa	Known RBP	10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	GUCY2D	Q02846	1103 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	SLMAP	Q14BN4	828 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	POU4F3	Q15319	338 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	CPSF6	Q16630	551 aa	Known RBP eCLIP	10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	PRICKLE4	Q2TBC4	344 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	FAM219B	Q5XKK7	198 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	FBXW10	Q5XX13	1052 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	YRDC	Q86U90	279 aa	Known RBP	10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	PACS2	Q86VP3	889 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	PRIMA1	Q86XR5	153 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	OR7G1	Q8NGA0	311 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	SMPDL3B	Q92485	455 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	LRRC46	Q96FV0	321 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	COX4I2	Q96KJ9	171 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	ERP44	Q9BS26	406 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	SFXN3	Q9BWM7	321 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	ITPA	Q9BY32	194 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	ACTR8	Q9H981	624 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	BEX4	Q9NWD9	120 aa	Predicted RBP	10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	TESMIN	Q9Y4I5	508 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	RTTN	Q86VV8	2226 aa		10.15	□□□□□ -0.78
PTPN7-204	ENST00000462815	CCDC189	A1A4V9	331 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	SH3D21	A4FU49	640 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	HCRTR2	O43614	444 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	ICOSLG	O75144	302 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	UGT2B11	O75310	529 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	CBX7	O95931	251 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	ATP1B1	P05026	303 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	C2	P06681	752 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	HEXA	P06865	529 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	CPM	P14384	443 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	PIK3CG	P48736	1102 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	MASP1	P48740	699 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	LHX2	P50458	406 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	MAP4K2	Q12851	820 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	TRAF3	Q13114	568 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	SNTA1	Q13424	505 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	GTF2H2	Q13888	395 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	SF3B4	Q15427	424 aa	Known RBP eCLIP	10.14	□□□□□ -0.79	2e-6	■■□□□ 12.6
PTPN7-204	ENST00000462815	NNAT	Q16517	81 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	PFKFB4	Q16877	469 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	GTF2H2C	Q6P1K8	395 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	FAM111B	Q6SJ93	734 aa		10.14	□□□□□ -0.79
PTPN7-204	ENST00000462815	CYP20A1	Q6UW02	462 aa		10.14	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms