RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 IL13RA1P78552 427 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 SSBP1Q04837 148 aaKnown RBP12.07□□□□□ -0.48
COL6A3-203ENST00000353578 PPP1R3BQ86XI6 285 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 ORAI2Q96SN7 254 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 PKP4Q99569 1192 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 SEMA4CQ9C0C4 833 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 RXFP3Q9NSD7 469 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 PGAP2Q9UHJ9 254 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 TRBV2A0A0J9YWF9 115 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 CREB1P16220 341 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 RANBP9Q96S59 729 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 ORAI3Q9BRQ5 295 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 TMPRSS5Q9H3S3 457 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 SLC22A23A1A5C7 686 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 AMHP03971 560 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 HNF1BP35680 557 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 PIGZQ86VD9 579 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 LAS2Q8IYD9 372 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 LILRB2Q8N423 598 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 FCRL2Q96LA5 508 aaPredicted RBP12.07□□□□□ -0.48
COL6A3-203ENST00000353578 KREMEN1Q96MU8 473 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 ZDHHC6Q9H6R6 413 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 SCML2Q9UQR0 700 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 BET1O15155 118 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 LCN6P62502 163 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 CES5AQ6NT32 575 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 PLPPR4Q7Z2D5 763 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 C2CD4AQ8NCU7 369 aaPredicted RBP12.07□□□□□ -0.48
COL6A3-203ENST00000353578 TOLLIPQ9H0E2 274 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 GRHPRQ9UBQ7 328 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 PCDHB10Q9UN67 800 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 NUMBLQ9Y6R0 609 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 ESPL1Q14674 2120 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 ZNF780AO75290 641 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-203ENST00000353578 TNK1Q13470 666 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 SERPINA11Q86U17 422 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 C2orf69Q8N8R5 385 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 HOXB13Q92826 284 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-203ENST00000353578 PMEPA1Q969W9 287 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 UPRTQ96BW1 309 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 PLD4Q96BZ4 506 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 DUS3LQ96G46 650 aaKnown RBP12.06□□□□□ -0.48
COL6A3-203ENST00000353578 CIPCQ9C0C6 399 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 TGIF2Q9GZN2 237 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 HIPK2Q9H2X6 1198 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 EQTNQ9NQ60 294 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 DDX4Q9NQI0 724 aaKnown RBP12.06□□□□□ -0.48
COL6A3-203ENST00000353578 LAMB1P07942 1786 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 TRAV19A0A0A6YYK7 116 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 UNC119BA6NIH7 251 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 IL1R2P27930 398 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 VEZF1Q14119 521 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 FKBP1CQ5VVH2 108 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 TMPRSS12Q86WS5 348 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 GPR26Q8NDV2 337 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 MFSD3Q96ES6 412 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 SYPP08247 313 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 LTKP29376 864 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 AVPR1BP47901 424 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 IQCF1Q8N6M8 205 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 SLC5A11Q8WWX8 675 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 TDRD3Q9H7E2 651 aaKnown RBP12.06□□□□□ -0.48
COL6A3-203ENST00000353578 HLA-AP01891 365 aaKnown RBP12.06□□□□□ -0.48
COL6A3-203ENST00000353578 FGF7P21781 194 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 ZNF84P51523 738 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 ARHGAP19Q14CB8 494 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 SLC6A19Q695T7 634 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 KCTD13Q8WZ19 329 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 HLA-CQ95604 372 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 ACDQ96AP0 544 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 TXLNGYQ9BZA5 131 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 NMNAT1Q9HAN9 279 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-203ENST00000353578 SNRNP70P08621 437 aaKnown RBP12.06□□□□□ -0.48
COL6A3-203ENST00000353578 PSMB1P20618 241 aaKnown RBP12.06□□□□□ -0.48
COL6A3-203ENST00000353578 CDC42EP5Q6NZY7 148 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 CILP2Q8IUL8 1156 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 PAQR8Q8TEZ7 354 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 ZNF226Q9NYT6 803 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 TCRBV7S2A1N4TA0A589 114 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 NMBRP28336 390 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 TMEM173Q86WV6 379 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-203ENST00000353578 GOT2P00505 430 aaKnown RBP12.06□□□□□ -0.48
COL6A3-203ENST00000353578 LIPJQ5W064 366 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 OR6S1Q8NH40 331 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 MAP10Q9P2G4 905 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 MED6O75586 246 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 ITPKBP27987 946 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 OR8S1Q8NH09 359 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 TAS2R16Q9NYV7 291 aa12.06□□□□□ -0.48
COL6A3-203ENST00000353578 GABRB3P28472 473 aa12.05□□□□□ -0.48
COL6A3-203ENST00000353578 NKX3-2P78367 333 aa12.05□□□□□ -0.48
COL6A3-203ENST00000353578 GTDC1Q4AE62 458 aa12.05□□□□□ -0.48
COL6A3-203ENST00000353578 OTOP3Q7RTS5 596 aa12.05□□□□□ -0.48
COL6A3-203ENST00000353578 OR6C4Q8NGE1 309 aa12.05□□□□□ -0.48
COL6A3-203ENST00000353578 KIAA1522Q9P206 1035 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-203ENST00000353578 ARFGEF2Q9Y6D5 1785 aa12.05□□□□□ -0.48
COL6A3-203ENST00000353578 A0A1B0GVG6 124 aa12.05□□□□□ -0.48
COL6A3-203ENST00000353578 B4GALT5O43286 388 aa12.05□□□□□ -0.48
COL6A3-203ENST00000353578 DPEP1P16444 411 aa12.05□□□□□ -0.48
COL6A3-203ENST00000353578 RAB13P51153 203 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms