RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 TIPARPQ7Z3E1 657 aaKnown RBP3.9□□□□□ -1.79
PRPF39-209ENST00000556353 CAMKMTQ7Z624 323 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 OR4N5Q8IXE1 308 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 GPD1LQ8N335 351 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 RASGEF1AQ8N9B8 481 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 KIAA1524Q8TCG1 905 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 KCNE4Q8WWG9 221 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 FEVQ99581 238 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 SLC39A3Q9BRY0 314 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 UBAC1Q9BSL1 405 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 SPZ1Q9BXG8 430 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 LRRC2Q9BYS8 371 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 SLC2A11Q9BYW1 496 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 TRIM7Q9C029 511 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 MTIF3Q9H2K0 278 aaKnown RBP3.9□□□□□ -1.79
PRPF39-209ENST00000556353 EGLN3Q9H6Z9 239 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 CNOT10Q9H9A5 744 aaKnown RBP3.9□□□□□ -1.79
PRPF39-209ENST00000556353 GSN-AS1Q9NRJ2 163 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 IL20Q9NYY1 176 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 CHORDC1Q9UHD1 332 aaPredicted RBP3.9□□□□□ -1.79
PRPF39-209ENST00000556353 MAGED1Q9Y5V3 778 aaPredicted RBP3.9□□□□□ -1.79
PRPF39-209ENST00000556353 CELSR3Q9NYQ7 3312 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 CITO14578 2027 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 ITPR1Q14643 2758 aa3.9□□□□□ -1.79
PRPF39-209ENST00000556353 IGF2RP11717 2491 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 MIA3Q5JRA6 1907 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 PATJQ8NI35 1801 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 SPAG17Q6Q759 2223 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 DMXL2Q8TDJ6 3036 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 LOC400499M0QZD8 3231 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 hCG_1809904A0A1W2PP81 198 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 A0A1W2PPE2 198 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 A0A1W2PR64 198 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 MBLAC1A4D2B0 266 aaPredicted RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 RSPH10B2B2RC85 870 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 HIP1O00291 1037 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 TRAFD1O14545 582 aaPredicted RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 IFIT3O14879 490 aaKnown RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 KINO60870 393 aaKnown RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 TBX10O75333 385 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 RSPH10BP0C881 870 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 POLR2MP0CAP2 368 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 CASTP20810 708 aaKnown RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 DNAJB1P25685 340 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 CCND2P30279 289 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 PCGF2P35227 344 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 HSD17B7P56937 341 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 POLR2LP62875 67 aaKnown RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 SP4Q02446 784 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 ITGB3BPQ13352 177 aaPredicted RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 IL11RAQ14626 422 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 PSMD6Q15008 389 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 SYCP1Q15431 976 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 VWC2Q2TAL6 325 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 EPC2Q52LR7 807 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 DET1Q7L5Y6 550 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 RNF130Q86XS8 419 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 RCOR2Q8IZ40 523 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 LSMEM1Q8N8F7 131 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 OR52B6Q8NGF0 335 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 ZNF606Q8WXB4 792 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 PROX1Q92786 737 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 ATP6V0A1Q93050 837 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 TSACCQ96A04 125 aaPredicted RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 TCEANC2Q96MN5 208 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 ZMAT2Q96NC0 199 aaKnown RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 BTBD9Q96Q07 612 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 TGS1Q96RS0 853 aaKnown RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 CPNE1Q99829 537 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 KLHL4Q9C0H6 718 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 UBE2ZQ9H832 354 aaPredicted RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 NKIRAS2Q9NYR9 191 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 NLGN3Q9NZ94 848 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 TXNDC16Q9P2K2 825 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 ZNF107Q9UII5 783 aaPredicted RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 ANKRD11Q6UB99 2663 aaPredicted RBP3.89□□□□□ -1.79
PRPF39-209ENST00000556353 ADGRA3Q8IWK6 1321 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 SDK1Q7Z5N4 2213 aa3.89□□□□□ -1.79
PRPF39-209ENST00000556353 BPTFQ12830 3046 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 FAM86B1E9PN63 330 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 MCF2LO15068 1137 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 APBB3O95704 486 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 CCNE2O96020 404 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 CSN3P07498 182 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 FAM86B2P0C5J1 330 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 GHRP10912 638 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 P4HA1P13674 534 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 ATP6V1B1P15313 513 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 FERP16591 822 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 TCF7P36402 384 aaPredicted RBP3.88□□□□□ -1.79
PRPF39-209ENST00000556353 GTF2A1P52655 376 aaPredicted RBP3.88□□□□□ -1.79
PRPF39-209ENST00000556353 LIMK1P53667 647 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 CLDN15P56746 228 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 CTAG1AP78358 180 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 FKBP3Q00688 224 aaKnown RBP3.88□□□□□ -1.79
PRPF39-209ENST00000556353 BECN1Q14457 450 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 ZNF146Q15072 292 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 TCEAL5Q5H9L2 206 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 ZBTB49Q6ZSB9 765 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 CCDC80Q76M96 950 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms