RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 MAPK12P53778 367 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 TPD52P55327 224 aaPredicted RBP3.42□□□□□ -1.86
CD44-235ENST00000532339 UBASH3AP57075 661 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 YWHAHQ04917 246 aaPredicted RBP3.42□□□□□ -1.86
CD44-235ENST00000532339 UPP1Q16831 310 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 FUT11Q495W5 492 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 LBHQ53QV2 105 aaPredicted RBP3.42□□□□□ -1.86
CD44-235ENST00000532339 SHEQ5VZ18 495 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 MFSD12Q6NUT3 480 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 PLBD1Q6P4A8 553 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 KLC3Q6P597 504 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 PODNL1Q6PEZ8 512 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 MOXD1Q6UVY6 613 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 PLXDC2Q6UX71 529 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 LINGO4Q6UY18 593 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 TMPRSS11BQ86T26 416 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 TMEM150AQ86TG1 271 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 APLFQ8IW19 511 aaPredicted RBP3.42□□□□□ -1.86
CD44-235ENST00000532339 TIGD4Q8IY51 512 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 ATAD1Q8NBU5 361 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 GRK7Q8WTQ7 553 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 SYN2Q92777 582 aaPredicted RBP3.42□□□□□ -1.86
CD44-235ENST00000532339 OXNAD1Q96HP4 312 aaPredicted RBP3.42□□□□□ -1.86
CD44-235ENST00000532339 LRR1Q96L50 414 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 ASCL2Q99929 193 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 SLX1AQ9BQ83 275 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 INPP5KQ9BT40 448 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 FUT8Q9BYC5 575 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 PLA2G12AQ9BZM1 189 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 STRADBQ9C0K7 418 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 MINDY3Q9H8M7 445 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 DEC1Q9P2X7 70 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 PISDQ9UG56 409 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 CPSF3Q9UKF6 684 aaKnown RBP3.42□□□□□ -1.86
CD44-235ENST00000532339 SNX7Q9UNH6 387 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 MYH6P13533 1939 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 COL27A1Q8IZC6 1860 aaPredicted RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 TRAV19A0A0A6YYK7 116 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 MTMR11A4FU01 709 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 NEMP2A6NFY4 417 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 C5orf52A6NGY3 159 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 C15orf62A8K5M9 175 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 HHLA1C9JL84 531 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 DDX39AO00148 427 aaKnown RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 TLR4O00206 839 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 SLC9A3R1O14745 358 aaPredicted RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 IFIT3O14879 490 aaKnown RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 RNF113AO15541 343 aaKnown RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 SDC3O75056 442 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 PDE9AO76083 593 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 BAG4O95429 457 aaKnown RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 SEMA4FO95754 770 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 LY6G6DO95868 133 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 IGHV2-70P01814 119 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 CSN3P07498 182 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 PRSS56P0CW18 603 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 PRKAR1AP10644 381 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 ACP2P11117 423 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 GNAZP19086 355 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 PSMA3P25788 255 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 NMT1P30419 496 aaKnown RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 TIA1P31483 386 aaKnown RBP eCLIP3.41□□□□□ -1.86
CD44-235ENST00000532339 ARCN1P48444 511 aaKnown RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 PTENP60484 403 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 GNB1P62873 340 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 MAT1AQ00266 395 aaKnown RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 FOLH1Q04609 750 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 C17orf67Q0P5P2 114 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 GPR17Q13304 367 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 ZNF177Q13360 481 aaPredicted RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 ATF7IP2Q5U623 682 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 ZNF497Q6ZNH5 498 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 TMEM182Q6ZP80 229 aaPredicted RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 LINC00696Q6ZRV3 163 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 SPATA21Q7Z572 469 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 CCDC91Q7Z6B0 441 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 PTOV1Q86YD1 416 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 CARNMT1Q8N4J0 409 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 CPSF7Q8N684 471 aaKnown RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 NAT8LQ8N9F0 302 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 L3MBTL4Q8NA19 623 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 NHLRC2Q8NBF2 726 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 HCAR2Q8TDS4 363 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 TMEM190Q8WZ59 177 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 ST6GALNAC6Q969X2 333 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 TMEM159Q96B96 161 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 RANBP9Q96S59 729 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 BOLA2Q9H3K6 86 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 TRPC7Q9HCX4 862 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 ACKR4Q9NPB9 350 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 SLC52A3Q9NQ40 469 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 LRWD1Q9UFC0 647 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 EXOC6BQ9Y2D4 811 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 SNX5Q9Y5X3 404 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 U3KQA8 63 aa3.41□□□□□ -1.86
CD44-235ENST00000532339 SONP18583 2426 aaKnown RBP3.41□□□□□ -1.86
CD44-235ENST00000532339 ZGRF1Q86YA3 2104 aa3.4□□□□□ -1.86
CD44-235ENST00000532339 A0A0G2JNG1 304 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 A0A1B0GUH1 482 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms