RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ZNF780BQ9Y6R6 833 aa14.02□□□□□ -0.16
NUP54-217ENST00000514987 PRSS38A1L453 326 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 ISM1B1AKI9 464 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 TAF4O00268 1085 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 ZW10O43264 779 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 NME6O75414 186 aaPredicted RBP14.01□□□□□ -0.17
NUP54-217ENST00000514987 ERAL1O75616 437 aaKnown RBP14.01□□□□□ -0.17
NUP54-217ENST00000514987 AIFM1O95831 613 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 HNRNPCP07910 306 aaKnown RBP eCLIP14.01□□□□□ -0.17
NUP54-217ENST00000514987 ALOX5P09917 674 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 F3P13726 295 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 CD40LGP29965 261 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 IFNGR2P38484 337 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 RHAGQ02094 409 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 RGS1Q08116 209 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 NCF4Q15080 339 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 SEC23BQ15437 767 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 CEBPEQ15744 281 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 SLC25A30Q5SVS4 291 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 C9orf50Q5SZB4 431 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 USP30Q70CQ3 517 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 TRIM69Q86WT6 500 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 NRROSQ86YC3 692 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 TMEM145Q8NBT3 493 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 LCN9Q8WX39 176 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 GAL3ST3Q96A11 431 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 MRPL38Q96DV4 380 aaKnown RBP14.01□□□□□ -0.17
NUP54-217ENST00000514987 PRRC1Q96M27 445 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 MKRN2Q9H000 416 aaKnown RBP14.01□□□□□ -0.17
NUP54-217ENST00000514987 PRDM9Q9NQV7 894 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 CES1P1Q9UKY3 287 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 PCOLCE2Q9UKZ9 415 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 MKLN1Q9UL63 735 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 ATG4BQ9Y4P1 393 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 PCDHGA3Q9Y5H0 932 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 PMF1-BGLAPU3KQ54 211 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 DOCK8Q8NF50 2099 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 MYO10Q9HD67 2058 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 CCDC88CQ9P219 2028 aa14.01□□□□□ -0.17
NUP54-217ENST00000514987 PRAMEF27A3QJZ7 478 aa14□□□□□ -0.17
NUP54-217ENST00000514987 GSAPA4D1B5 854 aa14□□□□□ -0.17
NUP54-217ENST00000514987 METTL15A6NJ78 407 aa14□□□□□ -0.17
NUP54-217ENST00000514987 H3BN98 237 aa14□□□□□ -0.17
NUP54-217ENST00000514987 TOR1BO14657 336 aa14□□□□□ -0.17
NUP54-217ENST00000514987 PROM1O43490 865 aa14□□□□□ -0.17
NUP54-217ENST00000514987 LATO43561 262 aa14□□□□□ -0.17
NUP54-217ENST00000514987 APBB3O95704 486 aa14□□□□□ -0.17
NUP54-217ENST00000514987 AGR2O95994 175 aa14□□□□□ -0.17
NUP54-217ENST00000514987 PTHP01270 115 aa14□□□□□ -0.17
NUP54-217ENST00000514987 HMGN2P05204 90 aaKnown RBP14□□□□□ -0.17
NUP54-217ENST00000514987 CHRM5P08912 532 aaPredicted RBP14□□□□□ -0.17
NUP54-217ENST00000514987 PEBP1P30086 187 aaKnown RBP14□□□□□ -0.17
NUP54-217ENST00000514987 IFNA8P32881 189 aa14□□□□□ -0.17
NUP54-217ENST00000514987 CSTF2P33240 577 aaKnown RBP eCLIP14□□□□□ -0.17
NUP54-217ENST00000514987 PPP5CP53041 499 aa14□□□□□ -0.17
NUP54-217ENST00000514987 TARDBPQ13148 414 aaKnown RBP eCLIP14□□□□□ -0.17
NUP54-217ENST00000514987 ATP1A4Q13733 1029 aa14□□□□□ -0.17
NUP54-217ENST00000514987 TMEM196Q5HYL7 178 aa14□□□□□ -0.17
NUP54-217ENST00000514987 TJAP1Q5JTD0 557 aa14□□□□□ -0.17
NUP54-217ENST00000514987 ATAD3BQ5T9A4 648 aa14□□□□□ -0.17
NUP54-217ENST00000514987 TMEM236Q5W0B7 351 aa14□□□□□ -0.17
NUP54-217ENST00000514987 PAQR7Q86WK9 346 aa14□□□□□ -0.17
NUP54-217ENST00000514987 OR5D16Q8NGK9 328 aa14□□□□□ -0.17
NUP54-217ENST00000514987 NT5CQ8TCD5 201 aa14□□□□□ -0.17
NUP54-217ENST00000514987 FGF14Q92915 247 aa14□□□□□ -0.17
NUP54-217ENST00000514987 UCN3Q969E3 161 aa14□□□□□ -0.17
NUP54-217ENST00000514987 CNRIP1Q96F85 164 aaPredicted RBP14□□□□□ -0.17
NUP54-217ENST00000514987 NXF2Q9GZY0 626 aaKnown RBP14□□□□□ -0.17
NUP54-217ENST00000514987 DSN1Q9H410 356 aa14□□□□□ -0.17
NUP54-217ENST00000514987 FGF22Q9HCT0 170 aa14□□□□□ -0.17
NUP54-217ENST00000514987 DNAAF2Q9NVR5 837 aaKnown RBP14□□□□□ -0.17
NUP54-217ENST00000514987 DAPK2Q9UIK4 370 aa14□□□□□ -0.17
NUP54-217ENST00000514987 PHF11Q9UIL8 331 aa14□□□□□ -0.17
NUP54-217ENST00000514987 SLC13A4Q9UKG4 626 aa14□□□□□ -0.17
NUP54-217ENST00000514987 IFT52Q9Y366 437 aa14□□□□□ -0.17
NUP54-217ENST00000514987 IRGMA1A4Y4 181 aa14□□□□□ -0.17
NUP54-217ENST00000514987 SAGE2PA6NJ88 616 aa14□□□□□ -0.17
NUP54-217ENST00000514987 DUXAA6NLW8 204 aa14□□□□□ -0.17
NUP54-217ENST00000514987 PGRMC2O15173 223 aa14□□□□□ -0.17
NUP54-217ENST00000514987 PPM1DO15297 605 aa14□□□□□ -0.17
NUP54-217ENST00000514987 ASGR2P07307 311 aa14□□□□□ -0.17
NUP54-217ENST00000514987 BMP4P12644 408 aa14□□□□□ -0.17
NUP54-217ENST00000514987 HOXB2P14652 356 aa14□□□□□ -0.17
NUP54-217ENST00000514987 CD72P21854 359 aa14□□□□□ -0.17
NUP54-217ENST00000514987 LBX1P52954 281 aa14□□□□□ -0.17
NUP54-217ENST00000514987 PRKAG1P54619 331 aa14□□□□□ -0.17
NUP54-217ENST00000514987 NFATC4Q14934 902 aa14□□□□□ -0.17
NUP54-217ENST00000514987 KIR2DS3Q14952 304 aa14□□□□□ -0.17
NUP54-217ENST00000514987 GPAT3Q53EU6 434 aa14□□□□□ -0.17
NUP54-217ENST00000514987 ENTPD8Q5MY95 495 aa14□□□□□ -0.17
NUP54-217ENST00000514987 PODNL1Q6PEZ8 512 aa14□□□□□ -0.17
NUP54-217ENST00000514987 C19orf48Q6RUI8 117 aa14□□□□□ -0.17
NUP54-217ENST00000514987 CCDC116Q8IYX3 515 aa14□□□□□ -0.17
NUP54-217ENST00000514987 FBXL6Q8N531 539 aa14□□□□□ -0.17
NUP54-217ENST00000514987 FAM26EQ8N5C1 309 aa14□□□□□ -0.17
NUP54-217ENST00000514987 OR4D11Q8NGI4 311 aa14□□□□□ -0.17
NUP54-217ENST00000514987 SLC7A13Q8TCU3 470 aa14□□□□□ -0.17
NUP54-217ENST00000514987 TMEM80Q96HE8 168 aa14□□□□□ -0.17
NUP54-217ENST00000514987 RIPOR3Q96MK2 946 aa14□□□□□ -0.17
NUP54-217ENST00000514987 TRNT1Q96Q11 434 aaKnown RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms