RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TCTN3Q6NUS6 607 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 GTF2IRD2Q86UP8 949 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 TSPYL5Q86VY4 417 aaPredicted RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 SLC30A8Q8IWU4 369 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 OR4N5Q8IXE1 308 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 ENTHD1Q8IYW4 607 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 NLGN4XQ8N0W4 816 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 SETD9Q8NE22 299 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 NT5CQ8TCD5 201 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 APH1BQ8WW43 257 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 PHF7Q9BWX1 381 aaPredicted RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 CCDC90BQ9GZT6 254 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 QRSL1Q9H0R6 528 aaKnown RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 VCX3AQ9NNX9 186 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 EQTNQ9NQ60 294 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 KCMF1Q9P0J7 381 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 SLC6A14Q9UN76 642 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 TRBV4-1A0A0J9YWV2 114 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 H3BMQ9 156 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 EPPINO95925 133 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 CCDC159P0C7I6 412 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 SMIM10L1P0DMW3 83 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 NR2F1P10589 423 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 SRFP11831 508 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 RHCEP18577 417 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 CSNK2A2P19784 350 aaPredicted RBP13.63□□□□□ -0.23
VRK3-217ENST00000599538 PCMT1P22061 227 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 DCKP27707 260 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 RXRGP48443 463 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 KCNJ5P48544 419 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 HMGA2P52926 109 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 GABARAPL2P60520 117 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 SMAD4Q13485 552 aaKnown RBP13.63□□□□□ -0.23
VRK3-217ENST00000599538 TAF8Q7Z7C8 310 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 ZNF687Q8N1G0 1237 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 DOK4Q8TEW6 326 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 ZNF566Q969W8 418 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 GTPBP3Q969Y2 492 aaKnown RBP13.63□□□□□ -0.23
VRK3-217ENST00000599538 SMIM10Q96HG1 83 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 HRASLS5Q96KN8 279 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 COG8Q96MW5 612 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 SLC6A18Q96N87 628 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 NODALQ96S42 347 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 DCUN1D5Q9BTE7 237 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 UBE2ZQ9H832 354 aaPredicted RBP13.63□□□□□ -0.23
VRK3-217ENST00000599538 ANKMY1Q9P2S6 941 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 P2RX2Q9UBL9 471 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 ENTPD4Q9Y227 616 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 FAM32AQ9Y421 112 aaKnown RBP13.63□□□□□ -0.23
VRK3-217ENST00000599538 M0R129 80 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 NDUFS2O75306 463 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 GUCY1B2O75343 617 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 SEC14L2O76054 403 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 EIF2S1P05198 315 aaKnown RBP13.63□□□□□ -0.23
VRK3-217ENST00000599538 SLC35G6P0C7Q6 338 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 SPTBP11277 2137 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 KRT20P35900 424 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 TSFMP43897 325 aaKnown RBP13.63□□□□□ -0.23
VRK3-217ENST00000599538 CCR5P51681 352 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 ARFIP1P53367 373 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 SIM1P81133 766 aaPredicted RBP13.63□□□□□ -0.23
VRK3-217ENST00000599538 KCNC4Q03721 635 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 RGS1Q08116 209 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 LSRQ86X29 649 aaPredicted RBP13.63□□□□□ -0.23
VRK3-217ENST00000599538 ELP4Q96EB1 424 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 APOL4Q9BPW4 351 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 DGCR6LQ9BY27 220 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 PRO3102Q9H379 93 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 LMAN1LQ9HAT1 526 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 HRASLS2Q9NWW9 162 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 SEC14L3Q9UDX4 400 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 KCND3Q9UK17 655 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 NAALAD2Q9Y3Q0 740 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 GPC6Q9Y625 555 aaPredicted RBP13.63□□□□□ -0.23
VRK3-217ENST00000599538 SDK1Q7Z5N4 2213 aa13.63□□□□□ -0.23
VRK3-217ENST00000599538 H0YGG7 62 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 M0R3H8 397 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 INMTO95050 263 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 GASTP01350 101 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 CTSBP07858 339 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 NR2F6P10588 404 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 TYRP1P17643 537 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 ARF3P61204 181 aaPredicted RBP13.62□□□□□ -0.23
VRK3-217ENST00000599538 SLC35A2P78381 396 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 EMX1Q04741 257 aaPredicted RBP13.62□□□□□ -0.23
VRK3-217ENST00000599538 TOP3AQ13472 1001 aaPredicted RBP13.62□□□□□ -0.23
VRK3-217ENST00000599538 SEC23BQ15437 767 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 CEBPEQ15744 281 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 TMEM64Q6YI46 380 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 DEF8Q6ZN54 512 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 SYT13Q7L8C5 426 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 ERI1Q8IV48 349 aaKnown RBP13.62□□□□□ -0.23
VRK3-217ENST00000599538 PHF10Q8WUB8 498 aaKnown RBP13.62□□□□□ -0.23
VRK3-217ENST00000599538 PROX1Q92786 737 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 COL26A1Q96A83 441 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 ZG16BQ96DA0 208 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 ALPK1Q96QP1 1244 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 GSDMCQ9BYG8 508 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 NMNAT1Q9HAN9 279 aaPredicted RBP13.62□□□□□ -0.23
VRK3-217ENST00000599538 GPR27Q9NS67 375 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms