RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 REPS1Q96D71 796 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 RBM18Q96H35 190 aaKnown RBP17.48■□□□□ 0.39
VPS35-202ENST00000561713 SGCZQ96LD1 299 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 PAFAH2Q99487 392 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 ZNF703Q9H7S9 590 aaPredicted RBP17.48■□□□□ 0.39
VPS35-202ENST00000561713 SLC24A3Q9HC58 644 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 SH2D2AQ9NP31 389 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 SPRR3Q9UBC9 169 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 Q9UFV3 132 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 DMGDHQ9UI17 866 aaKnown RBP17.48■□□□□ 0.39
VPS35-202ENST00000561713 PCTPQ9UKL6 214 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 TSC22D4Q9Y3Q8 395 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 L3MBTL1Q9Y468 752 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 FAM215AQ9Y5M1 114 aa17.48■□□□□ 0.39
VPS35-202ENST00000561713 A0A1B0GTL3 188 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 DYRK3O43781 588 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 CTAG2O75638 210 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 GPR75O95800 540 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 IGHG3P01860 377 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 INHBAP08476 426 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 RFPL3SP0C7P2 107 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 TSPAN8P19075 237 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 PTX3P26022 381 aaPredicted RBP17.47■□□□□ 0.39
VPS35-202ENST00000561713 MAGEA12P43365 314 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 CCNG1P51959 295 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 KCNJ2P63252 427 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 SNTB1Q13884 538 aaKnown RBP17.47■□□□□ 0.39
VPS35-202ENST00000561713 SPRED3Q2MJR0 410 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 SGO1Q5FBB7 561 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 SLC29A4Q7RTT9 530 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 ZZZ3Q8IYH5 903 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 SLC44A1Q8WWI5 657 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 RIT1Q92963 219 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 NINJ1Q92982 152 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 ATP6V1E2Q96A05 226 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 ART5Q96L15 291 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 JSRP1Q96MG2 331 aaPredicted RBP17.47■□□□□ 0.39
VPS35-202ENST00000561713 MRPL1Q9BYD6 325 aaKnown RBP17.47■□□□□ 0.39
VPS35-202ENST00000561713 SLC6A15Q9H2J7 730 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 EXO5Q9H790 373 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 DDX31Q9H8H2 851 aaKnown RBP17.47■□□□□ 0.39
VPS35-202ENST00000561713 ZBTB26Q9HCK0 441 aa17.47■□□□□ 0.39
VPS35-202ENST00000561713 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.47■□□□□ 0.39
VPS35-202ENST00000561713 IQANK1A0A1B0GTG1 560 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 BCKDKO14874 412 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 PGRMC2O15173 223 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 UGDHO60701 494 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 CLDN9O95484 217 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 CT62P0C5K7 136 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 ZFP36L2P47974 494 aaKnown RBP17.46■□□□□ 0.39
VPS35-202ENST00000561713 MAN2A2P49641 1150 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 SLC37A1P57057 533 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 PPP2R2AP63151 447 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 CUL3Q13618 768 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 CEBPEQ15744 281 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 BICRALQ6AI39 1079 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 OR52E8Q6IFG1 317 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 B3GNT6Q6ZMB0 384 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 RGS9BPQ6ZS82 235 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 IFT81Q8WYA0 676 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 ZNF592Q92610 1267 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 POLDIP3Q9BY77 421 aaKnown RBP17.46■□□□□ 0.39
VPS35-202ENST00000561713 GSX1Q9H4S2 264 aaPredicted RBP17.46■□□□□ 0.39
VPS35-202ENST00000561713 LDAHQ9H6V9 325 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 PROK2Q9HC23 129 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 MTRF1LQ9UGC7 380 aaKnown RBP17.46■□□□□ 0.39
VPS35-202ENST00000561713 ST6GALNAC2Q9UJ37 374 aa17.46■□□□□ 0.39
VPS35-202ENST00000561713 TNPO3Q9Y5L0 923 aaKnown RBP17.46■□□□□ 0.39
VPS35-202ENST00000561713 CHCHD2Q9Y6H1 151 aaPredicted RBP17.46■□□□□ 0.39
VPS35-202ENST00000561713 OR14I1A6ND48 311 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 FIGNL2A6NMB9 653 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 POC1B-GALNT4F8VUJ3 575 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 FBXO45P0C2W1 286 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 ECHS1P30084 290 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 ADH7P40394 386 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 TRPC1P48995 793 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 NNATQ16517 81 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 FRG2Q64ET8 278 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 ARSKQ6UWY0 536 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 PRR22Q8IZ63 422 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 FBXW8Q8N3Y1 598 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 MYRIPQ8NFW9 859 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 PAQR8Q8TEZ7 354 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 ISL2Q96A47 359 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 FRG2BQ96QU4 278 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 HBEGFQ99075 208 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 FMO2Q99518 471 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 GPATCH1Q9BRR8 931 aaKnown RBP17.45■□□□□ 0.38
VPS35-202ENST00000561713 PELOQ9BRX2 385 aaKnown RBP17.45■□□□□ 0.38
VPS35-202ENST00000561713 WDR41Q9HAD4 459 aa17.45■□□□□ 0.38
VPS35-202ENST00000561713 FARSBQ9NSD9 589 aaKnown RBP17.45■□□□□ 0.38
VPS35-202ENST00000561713 CNOT11Q9UKZ1 510 aaKnown RBP17.45■□□□□ 0.38
VPS35-202ENST00000561713 FLNAP21333 2647 aaKnown RBP17.45■□□□□ 0.38
VPS35-202ENST00000561713 ABCA4P78363 2273 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 A0A1B0GVC2 190 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 CCDC189A1A4V9 331 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 TRIM49D1C9J1S8 452 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 PPP6CO00743 305 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 AQP7O14520 342 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 SEMA3DO95025 777 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms