RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 VWA5B2Q8N398 1253 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 HORMAD2Q8N7B1 307 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 EXOSC8Q96B26 276 aaKnown RBP12.09□□□□□ -0.47
NEDD8-208ENST00000560427 PPWD1Q96BP3 646 aaKnown RBP12.09□□□□□ -0.47
NEDD8-208ENST00000560427 CTHRC1Q96CG8 243 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 CNPPD1Q9BV87 410 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 NUF2Q9BZD4 464 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 REEP4Q9H6H4 257 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 TRIM45Q9H8W5 580 aaPredicted RBP12.09□□□□□ -0.47
NEDD8-208ENST00000560427 ZBTB20Q9HC78 741 aaPredicted RBP12.09□□□□□ -0.47
NEDD8-208ENST00000560427 PNPOQ9NVS9 261 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 MYOTQ9UBF9 498 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 ERVK-19Q9WJR5 959 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 CFL2Q9Y281 166 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 MYOCOSA0A1B0GUC4 107 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 A0A1W2PS29 197 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 GABRR3A8MPY1 467 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 MYO1GB0I1T2 1018 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 SUV39H1O43463 412 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 BCAS2O75934 225 aaPredicted RBP12.08□□□□□ -0.48
NEDD8-208ENST00000560427 SORBS2O94875 1100 aaKnown RBP12.08□□□□□ -0.48
NEDD8-208ENST00000560427 WDPCPO95876 746 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 PRB1P04280 392 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 LBPP18428 481 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 FEN1P39748 380 aaKnown RBP12.08□□□□□ -0.48
NEDD8-208ENST00000560427 CD97P48960 835 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 TNFSF10P50591 281 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 SLC37A1P57057 533 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 C21orf58P58505 322 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 RNF4P78317 190 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 ZNF267Q14586 743 aaPredicted RBP12.08□□□□□ -0.48
NEDD8-208ENST00000560427 ZNF169Q14929 603 aaPredicted RBP12.08□□□□□ -0.48
NEDD8-208ENST00000560427 INAQ16352 499 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 MPEG1Q2M385 716 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 NADK2Q4G0N4 442 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 IL23RQ5VWK5 629 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 DGAT2L6Q6ZPD8 337 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 SLC29A4Q7RTT9 530 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 PTRH1Q86Y79 214 aaKnown RBP12.08□□□□□ -0.48
NEDD8-208ENST00000560427 NATD1Q8N6N6 113 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 C17orf47Q8NEP4 570 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 SUN3Q8TAQ9 357 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 PPCDCQ96CD2 204 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 MAGEB18Q96M61 343 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 TSSK3Q96PN8 268 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 NPAS2Q99743 824 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 UTP23Q9BRU9 249 aaKnown RBP12.08□□□□□ -0.48
NEDD8-208ENST00000560427 CDCP1Q9H5V8 836 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 AKTIPQ9H8T0 292 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 MAT2BQ9NZL9 334 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 EXO1Q9UQ84 846 aaKnown RBP12.08□□□□□ -0.48
NEDD8-208ENST00000560427 YARS2Q9Y2Z4 477 aaKnown RBP12.08□□□□□ -0.48
NEDD8-208ENST00000560427 PCDHGB6Q9Y5F9 930 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 SMG1Q96Q15 3661 aaKnown RBP12.08□□□□□ -0.48
NEDD8-208ENST00000560427 CPAMD8Q8IZJ3 1885 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 SCN2AQ99250 2005 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 DOCK10Q96BY6 2186 aa12.08□□□□□ -0.48
NEDD8-208ENST00000560427 PDPK1O15530 556 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 PRAMEF2O60811 474 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 ITGA10O75578 1167 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 PRPS1L1P21108 318 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 CYB561P49447 251 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 PSPHP78330 225 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 TUBA3CQ13748 450 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 EBPQ15125 230 aaKnown RBP12.07□□□□□ -0.48
NEDD8-208ENST00000560427 ZNF628Q5EBL2 1059 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 FCRLBQ6BAA4 426 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 RPUSD3Q6P087 351 aaKnown RBP12.07□□□□□ -0.48
NEDD8-208ENST00000560427 TUBA3EQ6PEY2 450 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 LARP4Q71RC2 724 aaKnown RBP eCLIP12.07□□□□□ -0.483e-13■■■■■ 29.6
NEDD8-208ENST00000560427 WDR75Q8IWA0 830 aaKnown RBP12.07□□□□□ -0.48
NEDD8-208ENST00000560427 C9orf40Q8IXQ3 194 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 DND1Q8IYX4 353 aaKnown RBP12.07□□□□□ -0.48
NEDD8-208ENST00000560427 LIX1Q8N485 282 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 SLC15A4Q8N697 577 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 ZNF321PQ8N8H1 164 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 ZFP28Q8NHY6 868 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 SLC22A8Q8TCC7 542 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 CKAP2Q8WWK9 683 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 MAELQ96JY0 434 aaKnown RBP12.07□□□□□ -0.48
NEDD8-208ENST00000560427 EGLN2Q96KS0 407 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 BBS4Q96RK4 519 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 PRPF18Q99633 342 aaKnown RBP12.07□□□□□ -0.48
NEDD8-208ENST00000560427 C1orf50Q9BV19 199 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 BRINP2Q9C0B6 783 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 SLAMF7Q9NQ25 335 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 ATAD3AQ9NVI7 634 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 MARCOQ9UEW3 520 aaPredicted RBP12.07□□□□□ -0.48
NEDD8-208ENST00000560427 PRODH2Q9UF12 536 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 GIMAP2Q9UG22 337 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 ATP6V1HQ9UI12 483 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 ZNF639Q9UID6 485 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 PCDHGA10Q9Y5H3 936 aa12.07□□□□□ -0.48
NEDD8-208ENST00000560427 TMEM200CA6NKL6 621 aa12.06□□□□□ -0.48
NEDD8-208ENST00000560427 HRKO00198 91 aa12.06□□□□□ -0.48
NEDD8-208ENST00000560427 SDHDO14521 159 aa12.06□□□□□ -0.48
NEDD8-208ENST00000560427 SCAMP2O15127 329 aaKnown RBP12.06□□□□□ -0.48
NEDD8-208ENST00000560427 PRKNO60260 465 aaPredicted RBP12.06□□□□□ -0.48
NEDD8-208ENST00000560427 MAN1A2O60476 641 aa12.06□□□□□ -0.48
NEDD8-208ENST00000560427 PLOD3O60568 738 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms