RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 LIMK1P53667 647 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 LRRC32Q14392 662 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 DHCR24Q15392 516 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 BCL2L15Q5TBC7 163 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 DDI2Q5TDH0 399 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 LUZP2Q86TE4 346 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 KRTCAP2Q8N6L1 136 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 OR7G3Q8NG95 312 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 GABARAPL1Q9H0R8 117 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 GHITMQ9H3K2 345 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 HEXA-AS1Q9H8Q6 139 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 PPIEQ9UNP9 301 aaKnown RBP13.29□□□□□ -0.28
LIG1-203ENST00000536218 NCKAP1Q9Y2A7 1128 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 KIAA1671Q9BY89 1806 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 TRAV20A0A0B4J274 112 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 ATP1B2P14415 290 aaPredicted RBP13.28□□□□□ -0.28
LIG1-203ENST00000536218 PBLDP30039 288 aaPredicted RBP13.28□□□□□ -0.28
LIG1-203ENST00000536218 ABRQ12979 859 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 BAMBIQ13145 260 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 C12orf40Q86WS4 652 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 OPALINQ96PE5 141 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 OR52E6Q96RD3 313 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 ADAM30Q9UKF2 790 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 RAB23Q9ULC3 237 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 SESN1Q9Y6P5 492 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 PTPRSQ13332 1948 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 DENND4CQ5VZ89 1909 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 GTPBP1O00178 669 aaKnown RBP13.28□□□□□ -0.28
LIG1-203ENST00000536218 PROM1O43490 865 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 OR5F1O95221 314 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 MPC2O95563 127 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 HIST1H2AGP0C0S8 130 aaPredicted RBP13.28□□□□□ -0.28
LIG1-203ENST00000536218 TIMP2P16035 220 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 HIST1H2ADP20671 130 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 IL18Q14116 193 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 GRIN2CQ14957 1233 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 DUSP6Q16828 381 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 COL28A1Q2UY09 1125 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 FAM109BQ6ICB4 259 aaPredicted RBP13.28□□□□□ -0.28
LIG1-203ENST00000536218 OR9Q1Q8NGQ5 310 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 OR52J3Q8NH60 311 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 HIST1H2AHQ96KK5 128 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 RBP7Q96R05 134 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 HIST1H2AJQ99878 128 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 H2AFJQ9BTM1 129 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 RANBP3Q9H6Z4 567 aaPredicted RBP13.28□□□□□ -0.28
LIG1-203ENST00000536218 SDHAF2Q9NX18 166 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 SPATA2Q9UM82 520 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 SLC6A14Q9UN76 642 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 ANTXRLA6NF34 631 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 TMEM202A6NGA9 273 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 C9P02748 559 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 GLAP06280 429 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 ADRA2AP08913 450 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 POU2F1P14859 743 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 DGKGP49619 791 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 CAV3P56539 151 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 CLDN20P56880 219 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 RTL4Q6ZR62 310 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 TMEM151BQ8IW70 566 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 ZZZ3Q8IYH5 903 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 LILRA3Q8N6C8 439 aaPredicted RBP13.28□□□□□ -0.28
LIG1-203ENST00000536218 ZNF655Q8N720 491 aaPredicted RBP13.28□□□□□ -0.28
LIG1-203ENST00000536218 PITX2Q99697 317 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 GSX2Q9BZM3 304 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 DPY30Q9C005 99 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 PIGUQ9H490 435 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 ACSL5Q9ULC5 683 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 TMCC3Q9ULS5 477 aa13.28□□□□□ -0.28
LIG1-203ENST00000536218 TRAV6A0A075B6T7 132 aa13.27□□□□□ -0.28
LIG1-203ENST00000536218 AGAP14A8MT82 685 aa13.27□□□□□ -0.28
LIG1-203ENST00000536218 KHNYNO15037 678 aaKnown RBP13.27□□□□□ -0.28
LIG1-203ENST00000536218 ZP3P21754 424 aa13.27□□□□□ -0.28
LIG1-203ENST00000536218 DDX6P26196 483 aaKnown RBP eCLIP13.27□□□□□ -0.287e-10■■■■■ 60
LIG1-203ENST00000536218 GGT2P36268 569 aa13.27□□□□□ -0.28
LIG1-203ENST00000536218 BLVRAP53004 296 aa13.27□□□□□ -0.28
LIG1-203ENST00000536218 PCDH1Q08174 1060 aa13.27□□□□□ -0.28
LIG1-203ENST00000536218 BTN2A2Q8WVV5 523 aa13.27□□□□□ -0.28
LIG1-203ENST00000536218 SMG7Q92540 1137 aaKnown RBP13.27□□□□□ -0.28
LIG1-203ENST00000536218 WDFY2Q96P53 400 aa13.27□□□□□ -0.28
LIG1-203ENST00000536218 SORCS2Q96PQ0 1159 aa13.27□□□□□ -0.28
LIG1-203ENST00000536218 SAMD4AQ9UPU9 718 aaKnown RBP13.27□□□□□ -0.28
LIG1-203ENST00000536218 MAB21L2Q9Y586 359 aa13.27□□□□□ -0.28
LIG1-203ENST00000536218 XIRP2A4UGR9 3374 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 A0A0A6YYJ9 748 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 hCG_1807616A0A1W2PRN6 198 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 SLC30A4O14863 429 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 CHP2O43745 196 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 SH3BGRLO75368 114 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 SYPP08247 313 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 AOAHP28039 575 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 SLC6A11P48066 632 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 P2RY14Q15391 338 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 ZXDCQ2QGD7 858 aaPredicted RBP13.27□□□□□ -0.29
LIG1-203ENST00000536218 KLHL22Q53GT1 634 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 CACUL1Q86Y37 369 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 SFTPA1Q8IWL2 248 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 RGL4Q8IZJ4 473 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 RNF175Q8N4F7 328 aa13.27□□□□□ -0.29
LIG1-203ENST00000536218 MS4A15Q8N5U1 240 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms