RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 C2orf92A0A1B0GVN3 265 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 WASHC1A8K0Z3 465 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 CAPN14A8MX76 684 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 SEMA3DO95025 777 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 GBAP04062 536 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 RFPL3SP0C7P2 107 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 GDF1P27539 372 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 PIK3R1P27986 724 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 CCNG1P51959 295 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 RIPPLY3P57055 190 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 NTRK2Q16620 822 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 WHAMMP3Q1A5X7 153 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 TBCELQ5QJ74 424 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 CES4AQ5XG92 561 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 HLA-DQA1Q5Y7H0 255 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 PTGR2Q8N8N7 351 aaPredicted RBP18.17■□□□□ 0.5
COL9A3-210ENST00000472880 ZNF592Q92610 1267 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 DIO2Q92813 273 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 GPR78Q96P69 363 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 CDK15Q96Q40 435 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 SLC6A15Q9H2J7 730 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 NOL11Q9H8H0 719 aaKnown RBP18.17■□□□□ 0.5
COL9A3-210ENST00000472880 ZDHHC18Q9NUE0 388 aa18.17■□□□□ 0.5
COL9A3-210ENST00000472880 CNOT11Q9UKZ1 510 aaKnown RBP18.17■□□□□ 0.5
COL9A3-210ENST00000472880 INTS1Q8N201 2190 aaKnown RBP18.16■□□□□ 0.5
COL9A3-210ENST00000472880 TP53I11O14683 189 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 CLPSP04118 112 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 SSTR4P31391 388 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 ADH7P40394 386 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 TMED10P49755 219 aaKnown RBP18.16■□□□□ 0.5
COL9A3-210ENST00000472880 RPS6KA2Q15349 733 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 TESK1Q15569 626 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 SLC25A35Q3KQZ1 300 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 TTC19Q6DKK2 380 aaPredicted RBP18.16■□□□□ 0.5
COL9A3-210ENST00000472880 GALNT12Q8IXK2 581 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 OR52B6Q8NGF0 335 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 NEIL3Q8TAT5 605 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 ACSS3Q9H6R3 686 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 PROK2Q9HC23 129 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 ACKR4Q9NPB9 350 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 TEX10Q9NXF1 929 aaPredicted RBP18.16■□□□□ 0.5
COL9A3-210ENST00000472880 NINJ2Q9NZG7 142 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 TMCO1Q9UM00 188 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 AKAP9Q99996 3911 aa18.16■□□□□ 0.5
COL9A3-210ENST00000472880 OR7A17O14581 309 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 ZWINTO95229 277 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 INHBAP08476 426 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 RBP1P09455 135 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 TRPC1P48995 793 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 C10orf62Q5T681 223 aaPredicted RBP18.15■□□□□ 0.5
COL9A3-210ENST00000472880 RIPPLY2Q5TAB7 128 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 FRG2Q64ET8 278 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 TMEM198Q66K66 360 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 SPNS3Q6ZMD2 512 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 TAOK1Q7L7X3 1001 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 WDR53Q7Z5U6 358 aaPredicted RBP18.15■□□□□ 0.5
COL9A3-210ENST00000472880 PLD6Q8N2A8 252 aaKnown RBP18.15■□□□□ 0.5
COL9A3-210ENST00000472880 ZNF441Q8N8Z8 693 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 UCN3Q969E3 161 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 TP53INP1Q96A56 240 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 TRIM44Q96DX7 344 aaPredicted RBP18.15■□□□□ 0.5
COL9A3-210ENST00000472880 PHF21BQ96EK2 531 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 FRG2BQ96QU4 278 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 CXorf21Q9HAI6 301 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 MTRF1LQ9UGC7 380 aaKnown RBP18.15■□□□□ 0.5
COL9A3-210ENST00000472880 PCDHGB3Q9Y5G1 929 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 CELSR1Q9NYQ6 3014 aa18.15■□□□□ 0.5
COL9A3-210ENST00000472880 NCKAP5O14513 1909 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 C15orf38-AP3S2A0A0A6YYH1 394 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 A0A1W2PS29 197 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 STX16-NPEPL1H3BU86 382 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 KIF2AO00139 706 aaPredicted RBP18.14■□□□□ 0.49
COL9A3-210ENST00000472880 STX16O14662 325 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 PGRMC2O15173 223 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 SMIM24O75264 130 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 NRG3P56975 720 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 FBXW4P57775 412 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 IFT88Q13099 833 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 TMEM64Q6YI46 380 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 PAGE2Q7Z2X7 111 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 LIX1LQ8IVB5 337 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 ULK2Q8IYT8 1036 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 OR4K14Q8NGD5 310 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 LRRC1Q9BTT6 524 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 ZNF358Q9NW07 568 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 AHSPQ9NZD4 102 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 XPR1Q9UBH6 696 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 PCTPQ9UKL6 214 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 IKBKGQ9Y6K9 419 aa18.14■□□□□ 0.49
COL9A3-210ENST00000472880 ANKRD33BA6NCL7 494 aa18.13■□□□□ 0.49
COL9A3-210ENST00000472880 TRIM3O75382 744 aaPredicted RBP18.13■□□□□ 0.49
COL9A3-210ENST00000472880 KLK1P06870 262 aa18.13■□□□□ 0.49
COL9A3-210ENST00000472880 NT5EP21589 574 aa18.13■□□□□ 0.49
COL9A3-210ENST00000472880 MASP1P48740 699 aa18.13■□□□□ 0.49
COL9A3-210ENST00000472880 RPP38P78345 283 aaKnown RBP18.13■□□□□ 0.49
COL9A3-210ENST00000472880 FUT7Q11130 342 aa18.13■□□□□ 0.49
COL9A3-210ENST00000472880 TRAF3Q13114 568 aa18.13■□□□□ 0.49
COL9A3-210ENST00000472880 TSNAXIP1Q2TAA8 658 aa18.13■□□□□ 0.49
COL9A3-210ENST00000472880 CCNYL2Q5T2Q4 361 aa18.13■□□□□ 0.49
COL9A3-210ENST00000472880 SLC44A1Q8WWI5 657 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms