RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 NELL2Q99435 816 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 FAM83CQ9BQN1 747 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 STOML2Q9UJZ1 356 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 ELF5Q9UKW6 265 aaPredicted RBP8.13□□□□□ -1.11
HPS4-206ENST00000439453 AUP1Q9Y679 476 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 DNMT3AQ9Y6K1 912 aaPredicted RBP8.13□□□□□ -1.11
HPS4-206ENST00000439453 BTN3A3O00478 584 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 RFPL3O75679 317 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 TRBC1P01850 177 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 CRATP43155 626 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 XCR1P46094 333 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 GANABQ14697 944 aaKnown RBP8.13□□□□□ -1.11
HPS4-206ENST00000439453 ANGPT1Q15389 498 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 LRRC70Q7Z2Q7 622 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 L3MBTL4Q8NA19 623 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 AKAP1Q92667 903 aaKnown RBP eCLIP8.13□□□□□ -1.11
HPS4-206ENST00000439453 MAGEB10Q96LZ2 347 aaPredicted RBP8.13□□□□□ -1.11
HPS4-206ENST00000439453 GPR137Q96N19 417 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 ZSCAN5AQ9BUG6 496 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 ASB8Q9H765 288 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 NMNAT1Q9HAN9 279 aaPredicted RBP8.13□□□□□ -1.11
HPS4-206ENST00000439453 COQ3Q9NZJ6 369 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 MALT1Q9UDY8 824 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 BTNL2Q9UIR0 455 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 PCDHGB7Q9Y5F8 929 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 I3L521 148 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 CHRM5P08912 532 aaPredicted RBP8.13□□□□□ -1.11
HPS4-206ENST00000439453 C1SP09871 688 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 HMGA2P52926 109 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 SF1Q15637 639 aaKnown RBP8.13□□□□□ -1.11
HPS4-206ENST00000439453 ZXDCQ2QGD7 858 aaPredicted RBP8.13□□□□□ -1.11
HPS4-206ENST00000439453 CNIH2Q6PI25 160 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 ANGPTL8Q6UXH0 198 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 PDZD3Q86UT5 571 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 OR8H3Q8N146 312 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 TMEM145Q8NBT3 493 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 AP3S1Q92572 193 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 KCTD7Q96MP8 289 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 KLF16Q9BXK1 252 aaPredicted RBP8.13□□□□□ -1.11
HPS4-206ENST00000439453 PPP1R3EQ9H7J1 279 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 B3GAT2Q9NPZ5 323 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 TDP1Q9NUW8 608 aa8.13□□□□□ -1.11
HPS4-206ENST00000439453 LOC102723532A0A0G2JNH3 316 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 FAM86C2PA6NEL3 165 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 INMT-MINDY4F8WBC2 141 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 CBX4O00257 560 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 GAPDHSO14556 408 aaPredicted RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 PLOD3O60568 738 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 PRAMEF4O60810 478 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 ETFAP13804 333 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 ZNF250P15622 560 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 SLC6A4P31645 630 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 FEN1P39748 380 aaKnown RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 PPP3R1P63098 170 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 SIGLEC14Q08ET2 396 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 FZD5Q13467 585 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 COX20Q5RI15 118 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 TMEM201Q5SNT2 666 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 CPTPQ5TA50 214 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 PRAMEF9Q5VWM5 478 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 ZNF730Q6ZMV8 503 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 MTERF3Q96E29 417 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 SOSTQ9BQB4 213 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 AIFM2Q9BRQ8 373 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 KATNB1Q9BVA0 655 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 TSSK6Q9BXA6 273 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 PPIL3Q9H2H8 161 aaKnown RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 TRPM5Q9NZQ8 1165 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 RHCGQ9UBD6 479 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 COMMD3Q9UBI1 195 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 RPL36Q9Y3U8 105 aaKnown RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 GABRR3A8MPY1 467 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 TRIM77I1YAP6 450 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 SCAMP2O15127 329 aaKnown RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 FABP7O15540 132 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 ALPIP09923 528 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 HMGCLP35914 325 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 ZNF91Q05481 1191 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 SCARB2Q14108 478 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 P2RY14Q15391 338 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 ARHGAP15Q53QZ3 475 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 RNLSQ5VYX0 342 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 TEX261Q6UWH6 196 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 Q6ZNB5 142 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 USP30Q70CQ3 517 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 KCTD20Q7Z5Y7 419 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 UBALD2Q8IYN6 164 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 ZNF680Q8NEM1 530 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 VPS37AQ8NEZ2 397 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 NFKBIDQ8NI38 313 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 GEMIN6Q8WXD5 167 aaKnown RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 MRPS31Q92665 395 aaKnown RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 SLC6A18Q96N87 628 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 MED18Q9BUE0 208 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 PCDHB9Q9Y5E1 797 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 KCNE2Q9Y6J6 123 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 U3KQ87 197 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 PRAMEF33A0A0G2JMD5 474 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 SERTM1A2A2V5 107 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 FAM227AF5H4B4 570 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms