RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 TMIEQ8NEW7 156 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 OR2T4Q8NH00 348 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 CANT1Q8WVQ1 401 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 HLA-CQ95604 372 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 MYRFLQ96LU7 910 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 F2RL3Q96RI0 385 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 DUSP23Q9BVJ7 150 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 GPR62Q9BZJ7 368 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 GPN2Q9H9Y4 310 aaPredicted RBP6.88□□□□□ -1.31
UPF2-203ENST00000397053 SSU72Q9NP77 194 aaKnown RBP6.88□□□□□ -1.31
UPF2-203ENST00000397053 TIMMDC1Q9NPL8 285 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 SDHAF2Q9NX18 166 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 NAALAD2Q9Y3Q0 740 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 PREX2Q70Z35 1606 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 H3BML4 177 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 YY2O15391 372 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 TMEM63AO94886 807 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 AHSGP02765 367 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 IL3P08700 152 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 GDF1P27539 372 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 GCGRP47871 477 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 GSK3BP49841 420 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 PSMA6P60900 246 aaKnown RBP6.88□□□□□ -1.31
UPF2-203ENST00000397053 ACTC1P68032 377 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 ACTA1P68133 377 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 TLE3Q04726 772 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 COL9A2Q14055 689 aaPredicted RBP6.88□□□□□ -1.31
UPF2-203ENST00000397053 ARL6IP1Q15041 203 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 LRIT3Q3SXY7 679 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 ZNF783Q6ZMS7 281 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 ARL14Q8N4G2 192 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 OR52P1PQ8NH57 321 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 SPTSSAQ969W0 71 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 TMBIM1Q969X1 311 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 DDIT4LQ96D03 193 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 TWNKQ96RR1 684 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 SYT3Q9BQG1 590 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 CLSTN3Q9BQT9 956 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 HDHD5Q9BXW7 423 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 ZNF355PQ9NSJ1 428 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 FAM118AQ9NWS6 357 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 SLC39A1Q9NY26 324 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 OAZ3Q9UMX2 235 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 CLTCL1P53675 1640 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 TULP2O00295 520 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 GKN3PP0CG01 181 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 CD9P21926 228 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 MLLT10P55197 1068 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 NKX3-2P78367 333 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 CLCA4Q14CN2 919 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 ZNF829Q3KNS6 432 aaPredicted RBP6.88□□□□□ -1.31
UPF2-203ENST00000397053 CDNFQ49AH0 187 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 BORAQ6PGQ7 559 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 KIAA0907Q7Z7F0 614 aaPredicted RBP6.88□□□□□ -1.31
UPF2-203ENST00000397053 ZNF554Q86TJ5 538 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 PRR18Q8N4B5 295 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 CREB3L4Q8TEY5 395 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 HOXD1Q9GZZ0 328 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 COQ3Q9NZJ6 369 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 ANKMY1Q9P2S6 941 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 EXOSC1Q9Y3B2 195 aaKnown RBP6.88□□□□□ -1.31
UPF2-203ENST00000397053 OR1A2Q9Y585 309 aa6.88□□□□□ -1.31
UPF2-203ENST00000397053 DOPEY2Q9Y3R5 2298 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 OR6C6A6NF89 314 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 LRRN3E7EW58 273 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 SLC22A1O15245 554 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 EIF4EP06730 217 aaKnown RBP6.87□□□□□ -1.31
UPF2-203ENST00000397053 TIMP2P16035 220 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 UFM1P61960 85 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 NTHL1P78549 312 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 PPA1Q15181 289 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 QPCTQ16769 361 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 LIN52Q52LA3 116 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 C6orf132Q5T0Z8 1188 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 MEDAGQ5VYS4 303 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 SLC39A5Q6ZMH5 540 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 GRAMD2AQ8IUY3 354 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 CMASQ8NFW8 434 aaPredicted RBP6.87□□□□□ -1.31
UPF2-203ENST00000397053 TRIB2Q92519 343 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 PYURFQ96I23 114 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 METTL2AQ96IZ6 378 aaKnown RBP6.87□□□□□ -1.31
UPF2-203ENST00000397053 OR5B12Q96R08 314 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 LRRN3Q9H3W5 708 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 CUTCQ9NTM9 273 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 NOCTQ9UK39 431 aaKnown RBP6.87□□□□□ -1.31
UPF2-203ENST00000397053 SMIM30A4D0T7 59 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 ANKRD30BLA7E2S9 258 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 AURKAO14965 403 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 CLN5O75503 358 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 APOL3O95236 402 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 HEXAP06865 529 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 MTHFD2P13995 350 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 PITPNBP48739 271 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 VEGFBP49765 207 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 EMX2Q04743 252 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 LIPJQ5W064 366 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 STEAP3Q658P3 488 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 S100A7AQ86SG5 101 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 WDSUB1Q8N9V3 476 aa6.87□□□□□ -1.31
UPF2-203ENST00000397053 PSD4Q8NDX1 1056 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms